Malus domestica (apple): 103447551
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Entry
103447551 CDS
T03194
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103447551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103447551
03009 Ribosome biogenesis [BR:
mdm03009
]
103447551
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103447551
Spliceosome [BR:
mdm03041
]
Complex A
U1 snRNP components
U1 related factors
103447551
Complex B
103447551
Ribosome biogenesis [BR:
mdm03009
]
Eukaryotic type
Pre-60S particles
Helicases
103447551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
103447551
NCBI-ProteinID:
XP_028943819
LinkDB
All DBs
Position
11:complement(join(3177282..3177397,3178194..3178421,3178844..3179079,3179157..3179242,3179426..3179518,3179747..3179901,3180088..3180246,3180363..3180542,3180671..3180974))
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AA seq
518 aa
AA seq
DB search
MAKRSNVPNSVSLTQHYGADAAQGSSNTASEGKEYGSQRRKITAQGGTPETQDHHKREIT
TDGTSYAPDEVEEYRLRREIRVVGWDDVPDPITTFDNTRFPEHVIQEFSKAGFVRPTPIQ
AQVWPMDLEDRDLIGIAQPGSGKMLGYLIPAIFHVNSQPKRSSGGDGPIVLILALTTQRA
EQIQQEGAKFAAAYNIKVLSGLYLLKHENSGQTCGGGILIDTLSSLLVLLKSKSTNLKSV
TYLVLDGADWMLSDTHEPQIRNILSQICLDYQKSFWGASWLEEVDKRAKLFLHNACKVQI
VSPILKVTPPVNQIVYVLTEDQKYNKLVELLGGILDGSRIVIFMDTKKGCESRDQIALQL
CTDGQHVVLVHENESQAERVRIVSEFQAGKIPIMIATDVAARDLDLKDVKYVINYDFPGS
LDDYVYHIDCFGSAAAKGTAYTFFTTANAGCAKGLTILLKKAGQNVSSELEQLGRDVTYP
GTYIPRTWRWEANNKMVYVNLCARSTWLHLITFLCNCI
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcggtccaatgtccctaattcagtaagcctaacacaacattatggtgctgat
gccgctcaaggctcctcaaatacggccagtgagggcaaggagtatgggagccaacggagg
aaaattactgctcaaggcggcacgcctgaaacgcaggaccaccacaagagggaaattact
actgatggcacatcttatgcgcccgacgaagtcgaggagtataggctacggagggaaatc
cgtgttgtaggctgggatgatgttccggaccccatcacgactttcgataacactcggttt
ccagaacatgttatacaagaattttcaaaagctggatttgttcgacctacaccaattcaa
gctcaagtatggccaatggatttggaggaccgtgaccttattggtattgctcaaccagga
tccgggaagatgctagggtatctgatccctgcaattttccatgtaaactcccagccaaaa
cgatctagtggtggagatggcccaatagtattgattttagctctaacaactcaacgcgct
gaacaaatccaacaggagggtgctaaatttgctgcagcttacaacattaaagtcttatcc
ggcttgtacctgcttaagcatgaaaattctggtcagacttgtggaggtgggattttaatc
gacacacttagtagcttgcttgttttgttaaagagcaaaagtacgaacttgaaaagcgtt
acataccttgtgttggatggtgctgattggatgctatcagacacgcatgagcctcaaatt
cgaaatatattatctcagatctgtttagactatcaaaaatcattctggggtgctagctgg
ctagaagaggttgataaacgggcaaaactattccttcacaacgcatgcaaagttcaaata
gtttctccaattctgaaagtgacacctccggtcaaccaaattgtttacgtccttactgaa
gatcagaaatataacaagttggtcgagctgctaggtggtatattggatggcagcagaata
gtgatattcatggatacaaagaaaggatgtgaatcacgtgatcagatcgccctgcagctt
tgcacggacggtcagcacgtagtcttggttcatgaaaacgaaagtcaagcggaaagggtc
cggattgtctctgagtttcaagctggcaagatccccataatgattgcaacagatgttgcc
gctcgtgatctagatctgaaggatgtgaaatatgttatcaattacgactttccgggatcc
cttgatgattatgtttaccacattgactgctttggaagtgctgcagcaaaaggaacagca
tacacattctttacaactgctaatgctggatgcgcaaagggacttaccatcttactcaag
aaagctggacagaatgttagttctgaattggaacaactggggcgtgatgtaacatatcca
ggaacctacatacctcggacgtggcgctgggaggctaacaacaaaatggtatatgtgaat
ttgtgtgcgcgctctacttggctgcatcttattactttcctgtgcaattgcatttaa
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