KEGG T03194: 103447768

Malus domestica (apple): 103447768

Entry

103447768         CDS       T03194

Name

(RefSeq) probable NOT transcription complex subunit VIP2 isoform X4

K12605

CCR4-NOT transcription complex subunit 2

Organism

mdm Malus domestica (apple)

Pathway

mdm03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:mdm00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103447768
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103447768
Messenger RNA biogenesis [BR:mdm03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103447768
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103447768

SSDB

Motif

Pfam:

NOT2_3_5_C

Other DBs

NCBI-GeneID:

103447768

NCBI-ProteinID:

XP_008385195

LinkDB

Position

11:complement(join(10350215..10350274,10350359..10350503,10350765..10350806,10350886..10350938,10351033..10351458,10351765..10351947,10352058..10352146,10353363..10353464,10353542..10353748,10354453..10354671,10354786..10354834,10354984..10355162,10355233..10355338,10355955..10355972))

AA seq 625 aa
MSGLLNSSLNGSASNLPDSSGRFASSFSGQSGAASPVFHHSGSMQGLHNIHGSFNVPNMP
GTLTSRNSTINNVPSGGVQQPAGSLSGGRFTSNNLPVALSQLSHGSSHAHSGVTNRGGLG
VSPILGNAGPRITSSMGNMVGGGNIGRSISTGGGLSVPGLASRLNLSGNGGSGSLTVQGQ
NRLMSGVLPQGSPQVISMLGNSYPNAGGPLSQSHVQVNNLSSMGIMNDVNSNDSSPFDIN
DFPSLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGDAEYG
INMHQKEQLHDNAVSMMQSQHFPMGRSSGFNLGGTYSSHRPQQQQHAPSVSSSGVSFSQV
NNQDLLHMHGSDIFPSSHSTYHSQTSGGPPGIGLRPLNSANSVSGMGSYDQLIQQYQQQN
QSQFRLHQMSAGNQSYRDQGMKSMQSAQSAPDLFGLLGLLSVIRMSDPDLTSLALGIDLT
TLGLNLNSTENLHKTFGSPWSDEPAKGDPEFSVPQCYYAKQPPVLHQGYFSKFSVETLFY
IFYSMPKDEAQLYAANELNNRGWFYHKEHRLWFIRVPNMEPLVKTNTCERGSYHCFDPNT
FETIRKDNFIVHYELLEKRPVLPQH

NT seq 1878 nt +upstreamnt +downstreamnt
atgtcgggtttacttaattcttctctaaacggatcagcctcaaatctcccagacagtagt
gggcgatttgcatcatctttctctggtcaatctggtgcagcttctcccgtttttcatcac
tcaggaagtatgcagggattgcataatattcatgggagcttcaatgttcccaacatgccg
ggtacattaacatcaagaaactcaacaataaataatgttccttctggtggagtccaacaa
ccagctggaagcctctctggcggacgattcacatcaaataaccttcctgttgctttgtct
cagttatctcatggaagctcccatgcacattcaggagtcactaatagaggaggattgggt
gtgtccccaattttgggaaatgcaggtcctcggattacaagttccatgggaaacatggtt
ggtgggggaaacattgggaggagtattagcactggtggaggcttgtcggtgcctggtctt
gcttctcgtctgaatttaagcggaaatggtggatctggaagtttaactgtacaagggcaa
aatcgcttgatgagtggtgtgctaccacaagggtctccgcaagtaatttcgatgctagga
aactcttaccctaatgctggtggtccactttctcaaagccatgtccaagtgaataatttg
agctcgatgggaataatgaatgatgtgaattctaatgacagttctccttttgacatcaac
gatttcccttcattaacaagtcgtcccagttctgcgggagggcctcaggggcagttgggt
tcactacgaaaacaaggccttggtgttagtcctattgttcaacagaaccaagagttcagc
atccaaaatgaggactttccagctttaccgggatttaaaggtggtgatgctgaatatggg
atcaatatgcaccagaaagaacaactccatgacaatgctgtgtcgatgatgcaatctcag
cacttcccaatgggacggtcctcaggatttaacttggggggaacttattcttctcatagg
ccacaacagcaacaacatgctccatcagtcagcagtagtggtgtctcgttttcacaagta
aacaatcaggatcttctccatatgcatggttcagacatattcccatcatcacattcaaca
tatcattcacagactagtggaggacctcctggcattggattaagacctctgaattctgcc
aattcagtttctggcatgggttcatatgaccagcttattcagcagtatcaacaacaaaat
caatcccagtttcgcctgcaccagatgtcagctggcaatcaatcatatagggatcaggga
atgaaatcgatgcagtcagcgcaatctgctccagacctatttggtttgcttggattgtta
agtgtcataaggatgagtgatcctgatcttacatctcttgcacttggaattgatttgaca
acgcttggattaaacttgaattcaacagaaaaccttcacaagacttttggttccccatgg
tctgacgagccggctaagggtgatccagagtttagtgttccgcaatgttactatgctaaa
caaccgcctgtactacatcaagggtatttttcaaagttttctgtggaaacgttgttctat
atcttttacagcatgcccaaagacgaggcccaattatatgctgccaatgaactaaataat
agaggctggttttatcacaaggaacaccgcctatggttcataagagtacccaacatggaa
ccacttgtgaagaccaacacgtgtgagagaggatcttatcactgctttgatcccaatacc
tttgaaactatccgaaaggataattttattgtgcattacgagttgttggagaagagaccg
gtgttaccacagcattga

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