KEGG   Malus domestica (apple): 103447877
Entry
103447877         CDS       T03194                                 
Name
(RefSeq) zinc finger CCCH domain-containing protein 24-like isoform X2
  KO
K15332  tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
Organism
mdm  Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mdm03016]
    103447877
Transfer RNA biogenesis [BR:mdm03016]
 Eukaryotic type
  tRNA modification factors
   Methyltransferases
    103447877
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 RRM_1 zf-CCCH MTS Methyltransf_4 Ubie_methyltran Methyltransf_15 Methyltransf_11 PCMT PrmA Methyltransf_32 Methyltransf_12 AviRa Cons_hypoth95
Other DBs
NCBI-GeneID: 103447877
NCBI-ProteinID: XP_008385306
LinkDB
Position
11:join(12075481..12076011,12076095..12076187,12076279..12076560,12076687..12076759,12076924..12077056,12077137..12077290,12077452..12077535,12077728..12077850,12078093..12078266,12078356..12078490,12078712..12078807,12079055..12079372,12080089..12080132,12080219..12080462)
AA seq 827 aa
MSSTPTPTAEPVTELLNPPSPLNGHGSTDQPQPPQDPATQPPDDVVSGDKRKREVNDDVQ
NPSAAPPLWKTSLCSFFRREAKTCGHGSECRYAHGEAELRPRPDNTWDPTSERAKKQKLE
EEIEECVALDNVMMTEAIDEDGDGGDAGGLDPELSKCLVHLPRNWKSEKLKEFLSEKGVE
FKSAKKKKGMALGFVSFENAEQLQNAVKDLEGISIGNKVMKVADVIPRSFEKRTKSIMAP
QIPGVGLDGENVEDSMTANGAEDGDGLNGRSARKVVTPLAHMSYDDQLEHKKSSLMQILK
RLTRNARKACPDGIPLPEWILKSREIGGLPCSLEGILASPVVKGYRNKCEFSVGYSLRGK
ITVGFMLGNFREGVTAVEEPFDCPNVSRISSQYASIFQEFLQHSSLPIWNRFKNIGFWRQ
LTVREGRRPGIATDSEHCEANIAEVMLIVQVSSSGFDDAQITSEYERLAQAFPAGAAASS
PSLPLTFLVIQDHQGISNAAPADAPLRSLSIPKAEGGSETQSADNVVEPKIHDYINNLKF
CISPTAFFQVNTPAAEKLYSLAGEWAQLGPDTLLFDVCCGTGTIGLTLAHHVGMVVGIEM
NASAVSDARRNAEINDIKNCRFVCAKAEDVMRSLLEEYAIAPQKQDDHVTEGSDKVIVTE
GEKAISVDNKPNPEESSSHELDTASEGLEIDKQEVRSQPQSSCTSEKGKTPVKCFSNVVA
IVDPPRNGLHPTVIKALRTHADLRKLVYISCNPETLVANAIELCTPSPEKIDKNKNNRAW
RNMGSAGLARHRTKSMPASEPFRPVKAMAVDIFPHTVHCELVMLLER
NT seq 2484 nt   +upstreamnt  +downstreamnt
atgtcttcaactccaactcccactgccgaacccgtaactgaactcctaaacccaccatcc
ccactcaacgggcatggttcaaccgatcaaccccaaccgccacaggacccagcaacccaa
ccgcccgacgacgtcgtatccggcgacaaacgcaagcgagaggttaacgacgacgtccaa
aacccttccgccgcgccccctctatggaagaccagcctctgctcctttttcaggcgcgag
gccaaaacctgcggccatggaagcgagtgccgctacgcacacggcgaggcggagctccgt
ccccgacccgacaacacgtgggacccgacatccgagcgcgccaagaagcagaagttggag
gaggagattgaggagtgcgtggctttggacaatgtgatgatgacggaggccatcgatgaa
gacggagacggcggcgatgctgggggtttggatcccgagctgagcaagtgcctggtgcat
ttgccgaggaattggaagtccgagaaactgaaagaatttctcagtgagaagggagtcgaa
tttaagtcggcgaagaagaagaagggcatggctttagggtttgtgagttttgagaatgca
gagcaactacaaaatgctgtgaaggacctggaaggaatatcgattggcaacaaagttatg
aaggttgcggatgtcattcccagatcattcgaaaagagaaccaaatcgataatggcccct
caaatcccaggtgttggattagatggggagaatgtggaagactctatgactgcaaatggg
gctgaggatggtgatgggcttaatggacgaagtgcccggaaagtcgtgactcccctagct
catatgtcttatgatgatcagttggagcataaaaagagctctcttatgcagattctcaaa
agacttacgaggaacgctcgtaaagcttgtcctgatggtattccacttccagaatggata
ctcaagtctagggagataggtggccttccatgcagtttagagggtatattagcgtcccca
gttgtaaaaggatatcggaacaagtgtgaattttcagttgggtattctttacggggaaaa
attactgtggggtttatgcttggaaactttagggagggtgttacagcagttgaagaacct
tttgactgcccaaatgtttccagaatttcttcccaatatgcttcaatatttcaggaattt
ctgcaacattcaagtttaccgatttggaacagatttaagaatattggattctggcgccaa
ttgacggttcgagaagggaggagaccaggcattgctactgattctgaacattgtgaggcc
aatattgcggaggtcatgcttattgttcaggtttccagtagtggatttgatgatgcgcaa
ataaccagtgaatatgagaggttggctcaagcttttcctgcaggagctgctgctagctct
ccatctttgcctctaacgtttttagttattcaggatcaccaaggaatatctaatgcagct
ccagctgatgctccactgcgctcattatctattcctaaagcagaaggtggttccgaaacg
cagtccgccgacaatgttgtagaaccaaaaattcatgactatataaacaatcttaagttc
tgtatatcaccaacagcctttttccaggttaatacccctgctgcagagaagctttactcg
cttgcgggggagtgggctcagttgggtcctgataccttgctatttgatgtatgttgtggg
actggaacaattgggctgactttagcacaccatgttggtatggttgttggcattgaaatg
aatgcttctgcggtttcagatgctcgtaggaatgctgaaattaatgacataaagaactgt
agatttgtctgtgcgaaggcagaggatgtgatgcggtctttgttggaagagtacgcaatt
gcacctcagaaacaagacgatcatgtcactgaaggtagtgacaaagttatagttacagag
ggcgagaaagcaatctcagtggacaacaaacccaaccctgaggagagttcaagccatgag
cttgacactgcatctgagggtttagaaattgacaagcaggaagtgagaagccaacctcaa
agcagttgcacttctgaaaaggggaaaactccagtcaaatgtttcagtaatgttgttgct
attgttgatcctccaagaaacggacttcaccccactgtgatcaaagcactgaggactcat
gctgatctaaggaagcttgtctacatttcctgcaatcctgaaacattggtggcaaatgcg
atcgagctttgcacaccttctcctgagaaaatcgacaagaacaagaacaacagagcatgg
agaaacatgggcagtgctggcctagcacggcacaggaccaagtctatgcctgcttcagaa
cctttccgtcctgtaaaagcaatggctgttgacattttcccacataccgtacactgtgaa
ttagtaatgctccttgagaggtag

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