Malus domestica (apple): 103447898
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Entry
103447898 CDS
T03194
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
mdm
Malus domestica (apple)
Pathway
mdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103447898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103447898
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103447898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
103447898
NCBI-ProteinID:
XP_008385328
LinkDB
All DBs
Position
11:complement(join(12568778..12568870,12569284..12569433,12570255..12570343,12571000..12571120,12571214..12571316,12571507..12571585,12572097..12572238))
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AA seq
258 aa
AA seq
DB search
MAGKGGATPSTYAPSPTTQKAKSLIFGNDDVDWVRSDGREFHQCRPAFFKTGAVNCASGS
AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCDVSYTTFATPVRGQGLDHKEFSSMLH
KALEGAIILETFPKTTVDVFALVLESGGSDFPVIISCASLALADAGIMMYDLVASVSVSC
LGKNLVIDPILEEESYQDGSLMLTCIPSRYEVTQLTITGEWSTPKVNEGMQICLDACAKL
VVIMRACLKGTNSALEET
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atggccgggaaaggaggagcaaccccgagcacttacgcgccgtctccgacgacccagaag
gccaaatccctaattttcggaaacgacgacgttgattgggtccgttccgacggccgtgaa
ttccaccaatgccgacctgcctttttcaagactggtgctgtaaattgtgcttcaggatca
gcttatgcagagtttggaaataccaaggtcattgtttctgtatttgggccaagagagagt
aagaaggcaatgatgtacagtgatataggacgcttaaattgcgatgtcagctatacaact
tttgctaccccagttcgtggacaggggttggaccacaaagaattttcttcaatgcttcat
aaagctttagagggtgcaataatattggaaactttccccaagactactgtggatgttttt
gcattggtgttggaatctggaggcagtgattttcctgtaatcatatcatgtgctagcctt
gccctagcagatgccgggataatgatgtatgaccttgttgcttcggtttctgtgtcttgt
ctcggaaagaaccttgttatcgatcctattttggaggaggaaagctaccaagatggaagc
ttaatgctgacttgtataccttctcgctacgaggtcactcaactaactattactggggaa
tggtcaaccccaaaagttaatgagggaatgcaaatatgcctggatgcctgcgcaaagctt
gtggtgatcatgagggcatgcttgaaagggactaattcggccttggaagaaacatga
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