KEGG   Malus domestica (apple): 103448026
Entry
103448026         CDS       T03194                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
mdm  Malus domestica (apple)
Pathway
mdm04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    103448026
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mdm04131]
    103448026
Membrane trafficking [BR:mdm04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    103448026
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin zf_RING_Vps8 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_HPS5 WDR55 WD40_Prp19 Beta-prop_EML_2 zf_RING_Vps8_fungal zf-RING_2 WDR90_beta-prop_4th ANAPC4_WD40 EIF3I PEP5_VPS11_N zf-HC5HC2H CAC1F_C
Other DBs
NCBI-GeneID: 103448026
NCBI-ProteinID: XP_008385480
LinkDB
Position
11:join(14021042..14021311,14022210..14022479,14022555..14022734,14023337..14023597,14024106..14024241,14024333..14024423,14025309..14025411,14026689..14026792,14026903..14026996,14027122..14027277,14027360..14027422,14027602..14027667,14028023..14028223,14029051..14029128,14029210..14029329,14029437..14029517,14029633..14029718,14030653..14030734,14030821..14031270)
AA seq 963 aa
MAPIPPDNGVEGDDEIEEEGEEEEEEEEEEEEEEEEEEEEEPRLKYQRMGGSIPTLLTSD
VASCIAVAERMIALGTHGGTVHILDFLGNQVKEFPAHTAAVNDLSFDIEGEFIGSCSDDG
SVVISSLFTDEKMRFEYHRPMKAIALDPDYVKKSSRRFVAGGLAGHLYFNTKRWLGFKDQ
VLHSGEGPIHAVKWRTSLIAWANDAGVKVYNTANDQRITFIERPRGSPRPELLLPHLFWQ
DDSLLVIGWGTSIKITSIKTNQSRATNGTYNHVPLSGMNQVDIVASFQTSYFISGIAPFG
DTLVVLAYIPVEEDGEKEFSSSAPSRQQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYK
ANDYSLAHAPFSGSSYAGGQWAEGDEPLYYIVSPKDVVIAKPRDAEDHIAWLLQHGWHEK
ALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHL
RQLPVLVPYIPTENPRLRDTAYEVALVALATNPSFHKELVSTVKSWPPVIYSSLPVISAI
EPQLNTSSMTDALKEALAVLYEIDGQYEKAFALYADLLKPDIFSFIEKHNLYDSIREKVV
QLMMLDCKLAVPLLIQNKDLITPSEVVNQLLNASDKCDSRYFLHAYLHSLFEADPHSGKE
FHDMQVELYAEYDPKMLLPFLRSSQHYTLEKAYEICVGRDLLKEQVFILGRMGNTKQALA
VIINKLGDIEEAVEFVNMQHDDELWEELIQQCLHKPEMVGVLLEHTVGNLDPLYIVNMVP
NGLEIPRLRDRLVKIITNYRTETSLRNGCNDILKADIVNLLVKYYKEATHGIYLSNEEDE
ARSKRNDSRASQVIEKSVGVRSMEVKSKPRGGARCCMCFDPFSIQNVNVIVFFCCHAYHV
TCLMDSTYTSEMKASVANPNEKVDDYGYGDSDGDDDGDDDDDTQSGGSRMRCILCTTAAS
GVK
NT seq 2892 nt   +upstreamnt  +downstreamnt
atggccccgattccgcccgataacggcgtcgaaggcgacgacgagatagaggaagagggc
gaggaggaagaagaagaggaagaggaggaagaagaagaagaagaagaagaagaggaagag
gagccgaggctcaagtaccagcgaatgggaggcagcattcccacactgttaacgagcgat
gtggcgtcgtgcatagccgtcgcagaacgaatgatcgcgctcgggactcacggcggcacc
gttcatattctcgattttctcgggaatcaggttaaggaattccctgctcatactgctgca
gtgaatgatcttagcttcgacatagaaggtgaatttataggaagctgttcagatgatggg
tctgttgtaataagcagtcttttcactgatgagaaaatgaggtttgagtatcatcgccca
atgaaggctattgccctggatccagattatgtaaaaaaatcatctagaagatttgtagct
ggtggtttagctggtcatttatattttaatacaaaaagatggctgggctttaaagatcag
gttttgcactctggtgaaggtcctatacatgcagtgaagtggagaacgagtctcattgct
tgggctaatgatgcaggtgtgaaagtgtacaatactgcaaatgatcaacgtataacattc
attgaaaggccacgaggaagcccacgtcctgagcttttgcttcctcacttattttggcag
gatgactcattgttggtcattggctggggaacatcaatcaaaatcacatcgataaaaaca
aatcagtctagagccaccaatgggacatataaccatgtcccattgtctggtatgaaccaa
gtggatattgtggcatcctttcagaccagctatttcatttctgggattgccccttttggt
gatactttggtcgttctagcctatatccctgttgaagaagatggggagaaggaatttagt
agctctgctccatcacgacagcagggaaatgcacagagaccagaagtacgtattgtaaca
tggaataatgatgaactttcaacagatgccttacctgtacatggctttgagcattacaag
gcaaatgactattcccttgcacatgctcctttctcaggtagcagctatgctggtggccag
tgggccgaaggtgatgaacctctgtactatattgtttccccaaaggatgtagtcattgca
aaaccgagagatgcggaagatcatattgcttggcttcttcaacatggttggcatgaaaaa
gctttggctgcagttgaagcgggccagggacggagtgaacttcttgatgaggttggttct
agataccttgatcatttgattgtggaaagaaaatatgctgaagccgcatctttatgccct
aaattgttgcgaggatctgcttcagcatgggaaagatgggttttccactttgctcatttg
cgtcagcttcccgtgttagtcccatatattccaacagaaaacccaagactgcgtgatact
gcttatgaggttgctcttgtagctctcgctacaaatccgtcttttcataaggagcttgtg
tcaactgttaaatcttggccacccgtgatctactcttcactgcctgttatctcagctata
gaacctcagcttaatacatcgtccatgacagatgcccttaaggaggcactagcagtgttg
tatgagattgatgggcaatatgagaaagcattcgcactatatgctgatcttttgaagcca
gacatattttccttcattgaaaagcacaatctgtatgattcgattcgggaaaaggttgtc
caattaatgatgctagattgcaagcttgcagttcctttgttgatccaaaacaaggattta
ataactccatctgaagttgtcaaccaacttctgaatgcaagtgataagtgtgattccaga
tatttcttgcatgcatacttgcattcactatttgaagcagaccctcattctggaaaagaa
tttcacgatatgcaggtagagctttatgcagaatatgatccaaagatgctacttcctttt
cttcgcagtagtcaacattataccctggagaaggcatatgaaatttgtgtcggaagagat
cttttaaaggagcaagtcttcattcttggaagaatgggaaatactaaacaagcccttgct
gtaatcataaataaacttggggatattgaagaggctgtagaatttgtaaatatgcaacat
gatgatgaactctgggaagagttaatccagcagtgtcttcataaacctgaaatggtaggt
gtgttgttggagcacacagttggaaacctagatcctctttatattgtgaatatggttccc
aacggattggagattcctaggcttagggatcggctagtcaaaatcatcaccaattacagg
accgaaacatctctaagaaatgggtgcaatgatattcttaaggctgatatcgtcaacctc
ttggtcaaatactacaaagaggcaacacatggaatttacttgagcaatgaagaagatgag
gcacggtcaaagagaaatgatagtagggcttctcaggtgattgagaaatcggtaggtgtg
agaagtatggaggttaaatcaaaacctaggggcggtgcaaggtgttgcatgtgtttcgat
cctttttctattcaaaatgttaatgtcattgttttcttttgctgtcatgcttatcatgtg
acttgtcttatggattccacctatacgagtgaaatgaaagccagtgtggccaatcctaat
gagaaagtagacgattatgggtatggtgatagtgatggtgacgatgatggtgatgatgat
gatgacacccaatcgggtggctctcgcatgcgttgtatcttatgtactactgctgctagt
ggggtgaagtga

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