KEGG   Malus domestica (apple): 103449428
Entry
103449428         CDS       T03194                                 
Name
(RefSeq) protein RRP6-like 2 isoform X1
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103449428
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103449428
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     103449428
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT NST1 RRP7
Other DBs
NCBI-GeneID: 103449428
NCBI-ProteinID: XP_008386969
LinkDB
Position
12:join(1028841..1029539,1029711..1029866,1030569..1030727,1030803..1030886,1031084..1031163,1031285..1031335,1031778..1031886,1032413..1032495,1033050..1033095,1033427..1033514,1033622..1033788,1034061..1034342,1034439..1034540,1034876..1035511)
AA seq 913 aa
MSQDAMTVNQSPPLQSRSDALENLTKAPLSSSISKLSGSSRFLPNSKDFYFYRNFDEFKA
PIEKITKETQTMLGSIGSSTPFWGKPMAFPQDLDDAYDWLVNVNDEVLERFDSSVDEFKR
VRKEAEEAKRPTSAALDTDDGFQLVCGKKKKKGPTGLASASANNDSSQVSTAVKVAAKDK
KTVAATKPKVPFHIPSIRRSQEEFNILVNNENQPFAHVWLQRSEDGQRFLHPLEKLSVLD
FVDNNIGDVESVKPPSLKSTPFKLVEEVKDLKKLAAKLRAVNEFAVDLEHNQYRSFQGLT
CLMQISTRTEDFIVDTLKLRTHVGPYLREVFKDPAKRKVMHGADRDISWLQRDFGIYICN
LFDTGQASRVLKLERNSLEYLLQHFCGVTANKEYQNADWRLRPLPEEMVRYAREDTHYLL
HMYDLMRTQLCLMPKESESSDTPLVEVYKRSYDICMHLYEKDLLTEDSYLHIYGLQGAGF
NSQQLAIVSGLCEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLVKSKHPYI
ERNLGSVVSIIRHSMQNAASFEPAVEHLAARARMASEERILVNDGSEALLPDQSVSNSTN
GDVSAVSPPSKQHKMEYKEIAFGASELVRNGQGNSLEGSPISVNLRQNSVPGQNREASSI
ACLLDSAKVTGVSVQVQKKPSRAFSSLLGSSVPKRKFDGDKKDKEGNKLEQITSSVNFPF
HSFSGGSEKTKPIVEAQDKSSDTPHSEGPLTASPPGSGLDDIITLENDSDGGEPVDGSSE
TRNEPEENDSVPSALEGDREDEPVSLSGLSSSFQNCFESLNQNRKTREVEKSLESGGLQV
KPFDYEAAKGQVIFGAKPIREAGAAEGVKSLNSAGKKKALAGRVSNDDGSKELGQGRRRQ
AFPATGNRSATFR
NT seq 2742 nt   +upstreamnt  +downstreamnt
atgagccaagacgcgatgacagtgaaccaatctccgccgctgcagtcgaggtccgacgcc
ctagaaaacctaaccaaagcccctctctcctcgtcgatttccaagctctccggctcctcg
cgattcttgccgaacagcaaggacttctatttctaccgcaacttcgacgaattcaaagcc
ccgatcgagaaaatcaccaaggagacgcagacgatgctcggctcgattggctcgtcgacg
cccttttgggggaaaccgatggctttcccccaagacttggacgacgcgtacgattggctc
gttaatgtgaacgacgaggtgctggagaggtttgactcgtcggtggacgagttcaagagg
gtgaggaaggaggcggaggaggccaagcggccgacgagtgcggcattggacacagacgat
gggtttcagttggtgtgtgggaagaagaagaaaaaggggcccactgggttggcttcggcc
agtgcgaacaatgattcgagtcaggtttccaccgccgtgaaggtggctgccaaggacaag
aaaactgtggcggcgacgaagcccaaggttccgtttcatataccaagcattcggaggtct
caggaggagtttaacattttggttaacaatgaaaaccagccgtttgcgcatgtttggttg
cagagaagtgaggatggtcagcggttccttcatcccctagagaagctttctgttctggat
tttgttgacaacaacatcggggatgttgagtctgtaaaaccgccttcattaaagtctacg
ccattcaagcttgtggaggaggtcaaagatctgaaaaagctagcagctaagctccgtgct
gttaatgaatttgcggttgatttggaacacaatcaatatcgatcgtttcaaggattgact
tgcttgatgcaaatttcaactagaaccgaagattttatagtagatactctgaagcttaga
actcatgttgggccatatcttagggaagttttcaaggaccctgccaagagaaaggtgatg
catggagcagatcgtgatatcagttggctccaacgtgattttggcatttatatctgcaat
ttgtttgatacgggccaggcttcgagggtgttgaaattggaaagaaatagtttggaatat
cttctacagcacttttgtggtgttactgctaacaaagaataccagaatgcagactggaga
ttacgccctctgcctgaggagatggtcagatatgccagagaagatacacactatttgctg
catatgtatgatttaatgagaacacagttatgtctaatgcccaaggaatcagaaagctct
gacactcctttagtagaggtttacaaacgcagttatgatatatgcatgcatctgtatgag
aaagatcttttgacagaagattcttatctccacatatacgggttgcaaggtgctggtttc
aattctcagcagcttgccattgtttccggtctttgtgagtggagggacgttgttgcccgt
gcagaggatgaaagcactggctatatattaccaaataaaactcttcttgaaattgctaaa
cagatgcctgtcaccactagcaagttaaggcggttggtgaaatcaaagcatccatacatt
gagcgtaatcttgggtcagttgttagtatcattagacattctatgcaaaatgctgcttct
tttgagcctgctgttgaacatctggcggcacgcgcaagaatggcatctgaagagagaata
ttggtcaatgatgggtctgaagccttgttaccggatcaatctgtcagcaattcgactaat
ggtgatgtatctgcagtttcacccccgtctaagcagcataaaatggagtataaggagatt
gcatttggtgcctctgaacttgtaagaaatggacaaggaaactctcttgaaggcagcccc
atttcagtaaatcttaggcaaaacagtgttccggggcaaaacagagaagcaagcagcatt
gcctgtttattagattcagcaaaggttactggagttagtgttcaggtgcaaaagaagcct
agccgtgcctttagttcgctgttggggagttcagttccaaaaagaaagtttgacggtgat
aaaaaggacaaggaaggtaataagttggagcaaattacatcttcagtgaacttcccattc
cactcattttcgggcgggagtgagaaaaccaaaccaatcgtggaagcacaagataaaagt
tctgatactccccattctgaagggccgcttactgcatcaccccctgggtctggtttagat
gacatcataacgttggaaaatgactcagatggaggtgagccagtagatggttcctcagaa
accagaaatgagcccgaggaaaatgattcagtaccatcagctttggaaggggatagggaa
gacgaacctgtgtctctctctggtttgtcctcaagcttccaaaattgctttgagtcgctt
aaccaaaacaggaagacaagagaagttgagaagtccctggaatctggtggtttgcaggtg
aagcctttcgactatgaggcagcaaagggtcaggtcatatttggagctaaaccgatcagg
gaagctggagctgcggaaggtgtaaagagcttaaattcagcgggaaagaaaaaagcttta
gccggtcgagtttcaaacgatgatgggtcaaaagaactaggacagggtagacgacgccaa
gcttttccggcgactggaaatagaagtgcgacatttcgttaa

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