KEGG   Malus domestica (apple): 103449624
Entry
103449624         CDS       T03194                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X2
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103449624
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103449624
   03012 Translation factors [BR:mdm03012]
    103449624
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103449624
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     103449624
Translation factors [BR:mdm03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    103449624
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C DEAD HA2_N AAA_22 nSTAND3 T2SSE Rad17 AAA_19 NPHP3_N Cas3-like_C_2 ATPase
Other DBs
NCBI-GeneID: 103449624
NCBI-ProteinID: XP_008387180
LinkDB
Position
12:complement(join(4469588..4469719,4469846..4470214,4470414..4470606,4470698..4470890,4470967..4471240,4471373..4471532,4471874..4472088,4472270..4472362,4472602..4472757,4472853..4473056,4473695..4473970,4474633..4474728,4474814..4475032))
AA seq 859 aa
MSTETANRVGSLLHSSPSQGEISVSGPSGSGQGNRQTSASVITSKPVAQLEPDNVNEKEK
LSLQLKEKQEKMKVSNSLKAMQSFREKLPAFKMKSEFLKAVSENQVLVVSGETGCGKTTQ
LPQFILEDEISRLHGADCNIICTQPRRISAVSVAARISSERGENLGETVGYQIRLESKRT
AQTRLLFCTTGVLLRQLVQDPELTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRL
ILMSATINADLFSKYFGNSPTIHIPGLTFPVAELFLEDILEKTRYAVKSEYDNFEGGNSR
RRRQQDSKKDPLTELFEDADIDVQFKNYSTATRKSLEAWSGSQLDLGLVEATIEHICRNE
RDGAILVFLTGWDDISKLLDKIKGNRFLGDPTKYMVLPLHGSMPTVNQREIFDRPPPNKR
KIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGR
VQPGVCYRLYPKMIHDAMLQYQLPEILRTPLQELCLHIKSLQLGAVGSFLAKALQPPDSL
AVQNAIELLKTIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAAL
AHRDPFVLPINRKEDADAAKRSFAGDSFSDHIALVKAFEGWKDAKQNGAGEGKSFCWENF
LSPVTLQMMEDMRIQFLDLLSNIGFLDKSRGANAYNQYSHDLEMVCAVLCAGLYPNVVQC
KRRGKRTAFYTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIYIRDSTNLSDYAL
LLFGGSLIPSKTGEGIEMLGGYLHFSASKSVLELIRKLRGELDKLLNRKIDNPGLDISSE
GKAVVSAVVELLHSQNVQY
NT seq 2580 nt   +upstreamnt  +downstreamnt
atgtctacagagactgccaatagagttgggagtcttttgcacagctcgccgtcacagggg
gaaatatctgtcagtgggccttctgggtcagggcagggaaacagacaaacttcagctagc
gtaattacgagtaaacctgtagcccagttagagcctgataatgttaatgagaaagagaaa
ctcagccttcaacttaaggagaaacaggaaaaaatgaaggtgagcaatagtttaaaagca
atgcaatcgtttcgagaaaagcttcctgctttcaaaatgaagtccgagtttctgaaagct
gtttcagaaaatcaggtcttggtagtctctggggagacaggttgcggaaaaacaacacag
cttccgcaatttattctagaagatgagatctcacgtctgcatggtgctgattgcaacata
atatgcacacaacctcgtcgtatttctgctgtatctgttgcagctcgtatatcctctgaa
aggggagagaatcttggtgaaactgttggttatcagatccgtcttgaatcaaagcgtact
gctcaaacacgactgttattttgcaccactggagtgttacttcgacagttggttcaagac
ccagaattaacgggcgtgagccacttgctagttgatgaaattcatgaaagaggcatgaat
gaggactttttactcataattttgcgtgaccttcttcctcggcgtccagatctacgatta
attctaatgagtgctaccatcaatgccgacttgttctccaaatactttggaaattcccca
acaatacatataccaggattaacttttcctgtggcagagttatttcttgaagatattctg
gagaaaactcgttacgctgtcaagtcagagtatgacaactttgaggggggaaattccagg
agaaggagacagcaagattccaagaaagatcctttaactgaattatttgaggatgccgat
attgatgttcagttcaaaaattacagcacagctacaagaaagtctcttgaagcttggtct
ggttcacagcttgatttggggctggtggaggcgacaattgaacatatatgtcgcaatgag
agagatggagcaattcttgtattccttacaggctgggatgacatatcaaagttacttgac
aaaattaagggaaatagattccttggagatcccacaaaatatatggttcttcccctgcat
gggtcaatgcctaccgtcaatcaacgagagatatttgatcgtcctccccctaataaaaga
aaaattgtgctagcaacaaacatagccgagagtagtatcaccatagatgatgttgtgtat
gtcatagactgcggaaaggcaaaggaaaccagttatgatgctttaaacaagttggcttgt
ctattaccttcatggatttcaaaggcttcagcacatcagaggcgagggcgtgctggccgt
gtgcaacctggagtttgttacagactatatccgaaaatgatccatgatgcaatgctccaa
tatcaattacctgaaatcctccggacgcctttgcaagagctatgcctccacatcaaaagt
ttgcaacttggagctgttgggtcatttttggcaaaggcacttcagccaccagattctctt
gcagttcaaaatgcaattgaacttctcaaaaccattggagctttagatgacacagaggag
cttaccccgcttggtcgccatctttgcactctaccattggatccaaacattgggaagatg
cttttaatgggttctatatttcaatgcctcaatcctgctttaacaattgcagctgctctc
gctcatcgtgacccatttgtactaccaataaataggaaagaggatgctgatgctgcaaag
aggtcctttgcgggtgattctttcagtgatcacatagctcttgtgaaagcttttgaagga
tggaaagatgcaaaacaaaatggagcgggagaaggaaagtcgttctgctgggagaacttt
ttatcccctgtaacattgcagatgatggaagatatgaggatccagtttcttgatctatta
tcaaatattggctttcttgacaaatccaggggtgctaatgcttacaatcaatacagccat
gacttggagatggtgtgtgcggtcctgtgtgctgggctctatccgaatgtcgttcagtgt
aaaagaagaggaaagcggacagcattctatactaaggaagtcggtaaagttgatatccat
cctgcatcagtcaatgctggggttcatttattccctctcccttacatggtttatagtgaa
aaggtgaagacaaccagcatttacatccgagactctacgaatttatcagattatgctcta
cttctatttggtggtagtcttatccctagcaagaccggggagggcattgagatgcttgga
ggttaccttcatttctctgcatcaaagagtgttttagaattgattcggaaactgcgtggt
gaacttgacaagcttttgaacaggaagattgacaacccaggattggacatctccagcgag
ggaaaggcagttgtgtctgctgtggtagagttgctgcatagtcagaatgtacaatattga

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