Malus domestica (apple): 103449968
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Entry
103449968 CDS
T03194
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03013
Nucleocytoplasmic transport
mdm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103449968
03015 mRNA surveillance pathway
103449968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103449968
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103449968
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103449968
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
103449968
NCBI-ProteinID:
XP_008387511
LinkDB
All DBs
Position
12:join(15372513..15372791,15372970..15373263,15373441..15373668,15374012..15374077,15374545..15374949,15375046..15375175,15375743..15375828,15376070..15376126)
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AA seq
514 aa
AA seq
DB search
MAESDAPAPATATAEPSAPSEKSSPEASTTAPPPAQKPETKRWADEEDDPPEEPEKKDDA
PAPSTSEPEVNLAELKITENKFLDDPEDSNISAVTDGDTPYTSASSFEDLKLSPEVLKGL
YVEMQFKKPSKIQAITLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNLKAPQAL
CICPTRELAIQNMEVLQKMGKYTGITAECAVPTDRTSSTSTQSRPPVSAQIVIGTPGTIK
RLMSTKKLGVSKVKVLVFDEADHMLAEDGFKDDSLRIMKDIERFSSHCQVLLFSATFNEK
VTNFVSKVIKGGGNQLFVKKEELSLEAVKQYKVYCPDELAKIDVIKSKIFELGEKLGQRI
IFVRTKNSARMLHQQLVQDGYAVTTIQGALNAEDRDKIVKEFKDGLTQVLISTDLLARGF
DQQQVNCVVNYDLPIKYREGPRTRDPPEPDYEVYLHRIGRAGRFGRKGAVFNLICGDWDE
LTMSKIEQYFNTPVTEVQNTEEAFEGALKAAGLL
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggctgagagcgacgcccccgcccccgccacagcgaccgcagaaccgtcggcgccgtca
gaaaagtcgtctcccgaggcgtctaccaccgctcctccgccggcgcagaagcctgaaaca
aaacggtgggccgacgaagaggacgaccctccagaggagcccgagaagaaagacgacgcg
cctgcgccctctacttccgagccggaggtcaaccttgccgaattgaagattacggagaac
aagttcctcgacgaccccgaagactctaatatcagtgccgttactgacggagacacgccg
tacacatccgcgagtagtttcgaggatctgaaactgtcgccggaggtactgaagggtttg
tatgtagagatgcaattcaagaagccgagcaaaatccaggcgatcactttgccaatgatt
ttgacccctccctataaagatcttattgctcaggcgcataatggttcgggcaaaaccact
tgtttcgtgctcgggatgctcagccgtgtcgatcccaacctcaaagctcctcaggcgctc
tgcatttgccccaccagagagttggccattcagaatatggaagttcttcagaagatgggg
aagtacacagggataactgcagagtgtgctgtccctacagataggacgagttctacctcg
acgcaatccaggccaccagtgtcggcacaaattgtgattggaactcctggtacaattaag
agattaatgtcgacgaaaaaactcggtgtgagcaaggtcaaggttcttgttttcgacgag
gctgatcacatgcttgccgaggatggctttaaggatgattctttgaggataatgaaggac
atagagaggtttagctctcactgccaggtgcttttattttctgctacatttaatgaaaaa
gtcacaaactttgtttcaaaagtgatcaaaggtggtggtaatcaactctttgtaaagaaa
gaagagctatctttggaggctgtgaagcagtacaaggtgtactgccctgatgaattggca
aagatcgacgtcatcaaaagtaaaatatttgaactgggagagaaattggggcagagaatt
atatttgtacggacaaaaaatagcgcaagaatgttgcatcagcaacttgttcaagatggt
tatgcagttactactattcaaggtgccctcaatgctgaagatagagacaaaatagtcaaa
gagttcaaagatggcttaacccaagttcttatatcaactgacctactcgctcgaggcttt
gatcaacagcaggttaattgtgttgtcaattatgatcttccaatcaaatatagagagggc
cccaggacacgtgatcctcccgaacctgattatgaggtctacttgcatagaattggaagg
gcaggacgttttggtcgcaagggggctgtgtttaacttgatttgcggtgattgggatgaa
ttgaccatgtcaaagattgagcagtattttaacaccccagtaacagaggttcaaaacacc
gaagaagcttttgaaggcgctcttaaagctgccggtttactgtaa
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