Malus domestica (apple): 103450079
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Entry
103450079 CDS
T03194
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 57 isoform X1
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mdm03009
]
103450079
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103450079
Ribosome biogenesis [BR:
mdm03009
]
Eukaryotic type
90S particles
Helicases
103450079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
T4SS-DNA_transf
AAA_19
UTP25_NTPase-like
Utp25_C
Motif
Other DBs
NCBI-GeneID:
103450079
NCBI-ProteinID:
XP_008387622
LinkDB
All DBs
Position
12:join(18687480..18687560,18687646..18687790,18687884..18688005,18688100..18688191,18688341..18688437,18688601..18688681,18688764..18688996,18689207..18689401,18689503..18689593,18689984..18690106,18690479..18690629,18691057..18691265)
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AA seq
539 aa
AA seq
DB search
MEEGTSFLFAGVNFNRKKFSRDFSRFQKKNIESEKVVEDSSLFGITESSTEQVAAEEEEV
RAVPVKKRKRKGEVSEGVEGISVFKTSKMAKAAKAEKQKPGNELSEHKKELNRQLERDSL
LRKKYNIHVSGNNIPSPLDSFADLTSRYGCEPYLLQNLAELGFKEPTPIQRQAIPILLSS
RECFACAPTGSGKTLAFVCPMLMKLKHTSKDGIRAVILCPTRELAAQTTRECKKMAKGNK
FYIKLMTKDLARNADFSKIRCDILISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELG
LLKQIDSVVKACSNPSIIRSLFSATLPDFVEELARTIMHDAVRVIIGRKNTASETIKQKL
VFAGSEEGKLLALRQSFKESLNPPVLIFVQSKERAKELYGELLFENIRVGAIHSDMSQAQ
RENAVDDFRAGKTWVLLATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRCGRAGRSG
EAITFYTEEDIPYLKNIANVMSTSGCEVPSWIMALRKQKWKKHRPRRESISTQPKDEKE
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaggcacttcatttttgttcgccggcgtcaacttcaaccggaaaaagttctcc
agggacttctccagattccagaagaagaacatagagagcgagaaagtggtagaagattct
agcttgttcggaattacggaatcttcaacggagcaagtggcggcggaggaggaggaggtg
cgagcggtgccagttaagaagaggaagcggaagggggaggtttctgagggtgtggagggg
attagtgtctttaagacctcaaaaatggcgaaggcagcgaaagcggagaaacagaagcct
ggaaatgaactatccgagcataagaaggagttaaataggcaacttgagcgggattcgctg
ctgcgaaagaagtataacattcatgtgtccggaaataacatcccttcgccacttgatagt
tttgcagacttaacctctagatatgggtgcgagccatatttacttcagaatttggcggaa
cttggatttaaagaaccaacgccaatccaaaggcaggctattccaatcctcttatctagt
cgggaatgctttgcttgtgctccgactggatctggaaaaacccttgcttttgtttgtccc
atgctaatgaaacttaagcatacatctaaggatggcatccgagctgttattctgtgtcct
acacgagaattagctgctcagacaaccagagagtgcaaaaagatggcaaaaggaaataaa
ttctacatcaaattaatgactaaagacctggcaagaaatgcagatttttcaaaaatacgc
tgtgacatactcatttctactccacttcggttacggttggctatccggaaaaagaaggtt
gatttaagcagggttgagtatctggtattggatgagtctgataagctatttgagcttggc
ttgttaaagcagattgactctgtggtcaaagcatgttcaaacccttcaattattcgctcc
ttgtttagtgctactttacctgatttcgttgaggagcttgcccgcactataatgcatgat
gctgttagagttatcattggcaggaaaaatactgcttctgagactatcaagcaaaaattg
gtctttgctggaagtgaagaggggaagctattagcacttcgtcaaagctttaaggagagt
ctgaatccaccagtgttgatctttgtacaaagcaaggagcgagctaaggaactctacgga
gaactgttgtttgagaacataagagttggtgccatacattctgatatgtcccaagcacag
cgagaaaatgctgtagatgacttcagagctgggaaaacatgggttttacttgccactgat
gttattgctcggggtatggatttcaaaggtgtcaactgtgtaattaattatgattttcca
gattctgcagctgcgtacattcacaggattggtcggtgcggacgagcagggaggagtgga
gaagctattactttctacacagaggaagatattccatatcttaagaatatagctaatgtg
atgtcaacatcaggttgtgaagttccatcttggatcatggccttgcgcaaacagaagtgg
aaaaagcaccgaccccgaagggaatcgatatcaacacaaccgaaagatgagaaagagtga
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