Malus domestica (apple): 103450189
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Entry
103450189 CDS
T03194
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm00040
Pentose and glucuronate interconversions
mdm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103450189
Enzymes [BR:
mdm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103450189
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Tir_receptor_C
Motif
Other DBs
NCBI-GeneID:
103450189
NCBI-ProteinID:
XP_008387722
LinkDB
All DBs
Position
12:join(19786551..19786830,19787274..19787625,19787709..19787919,19788017..19788085,19788936..19789172)
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AA seq
382 aa
AA seq
DB search
MGNSHGHHRKRRNGPGSSETANSGFKYGPSDQAAQIPSSSSTSAKKTSSSMVVALPYAHV
DSSLRALSAQAEGFGRLAIGGLHGAVYHVTTLADDGPGSLREGCRQKEPLWIVFEISGTI
HLQSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDGIQIKPNS
KHIWIDRCSLRDYEDGLIDITRGSTDITISRCHFSQHDKTMLIGSDPSHIDDRCIRVTIH
HCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSECNIYEAGQKKVAFKY
LTEKAADKETPMTGHIKSEGDLFVTGTQAGLSPDGGEHCVFHPTQHYQTWTKGPPVDDLK
HVLQHCAGWQCVPRPADQGLAK
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgggcaactcccacggccaccaccgtaaacgccgtaatggccccgggtccagtgaaacg
gccaattcgggctttaaatatggtccgtcggatcaagcggctcaaatccctagctctagc
tcaacgtcagctaagaagaccagcagcagcatggtggtcgccttgccgtacgctcacgtc
gactcgagcttgcgcgccctctccgcccaggccgagggcttcggccggctcgcaatcggc
ggcctccacggcgccgtttaccacgtcaccactctagcagatgatggtccgggttcactt
agggaaggatgtcgtcagaaagaaccgctttggattgtcttcgaaatttcaggcactatc
catctccaatcttacttgaacgtgtcatcgtataagactatagatgggcgtggtcagagg
attaaacttacagggaaggggttgaggttgaaggaatgtgaacatgtcattgtgtgcaat
ttagagtttgaaggtggtagagggccagatgttgatggcattcaaataaaacccaattct
aaacacatatggatagatcgctgcagccttcgtgattatgaagacggacttatcgatatc
accagaggaagcactgatattacaatttccaggtgtcatttttcacagcatgataagaca
atgctgattggctcagatccctctcatattgatgacagatgcatccgggttaccattcac
cactgtttctttgatgggaccagacagaggcatcctcgtgttagatttgcaaaagtacat
ctatataacaattacacccgaaactggggcatatatgctgtttgtgctagtgtagaatcg
cagatattctcggaatgcaatatatatgaagcaggacagaaaaaagtggcatttaagtac
cttacggagaaggcagcggacaaggagacgccaatgactggccacattaagtccgaaggc
gacttatttgtaacgggaactcaagcaggattatcccccgatggcggtgaacattgcgtg
tttcatcctacccagcactatcagacatggacaaaaggaccgcccgtggacgatcttaag
catgttctccaacattgcgcaggatggcagtgtgttccgcggccagctgatcaaggatta
gcgaagtag
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