KEGG   Malus domestica (apple): 103450234
Entry
103450234         CDS       T03194                                 
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial isoform X1
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
mdm  Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mdm03016]
    103450234
Enzymes [BR:mdm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     103450234
Transfer RNA biogenesis [BR:mdm03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    103450234
SSDB
Motif
Pfam: RNB CSD_RNase_II HTH_RNase_II Pch2_N
Other DBs
NCBI-GeneID: 103450234
NCBI-ProteinID: XP_008387770
LinkDB
Position
12:complement(join(21233365..21233487,21233866..21234090,21234634..21235029,21235425..21235584,21236177..21236326,21236404..21236510,21236623..21236685,21236861..21237043,21237272..21237493,21237946..21238077,21238148..21238225,21238331..21238444,21238609..21238768,21239142..21239428))
AA seq 799 aa
MAVRATVGSCSIFRSASSSASSPTLLPFRCCPCHFPTLQFRRLSKLGIRFPIFRSGKLAP
GHGSGVQSTSVHSLVDSVMEELGALRRRRLVPAAAKVELTSSGGIVEDKLVSRALQQGLL
LEFKKDAERVLLAVAQKPDGKKNWMVSDQNGVTSSIKPQQITYIVPGVENFDHTDISDFI
QKAQANSDPALLEFAWVELLEKNKRVTAEELAEMIFGSVEPLECYCAHLLLSEDEVYFTV
LETKGSRSVYGPRPAVQVEELLRRKLAKEAAEKELQEFKQLLKSAKAMPLNAKPPKSSWL
AEEKIRHKIESLEAYAIDACTNDDQRKTAGTILRTMGMVKTASSALNLLIDIGYFPVHVN
LDLLKLNIRTDHSDGVISAAEHLLSDSSDLDVIERTDLTHLKVYAIDVDEADELDDALSA
TRLQDGRIKIWIHVADATRFVQPGSIVDREAMRRGTSVFLPTATYPMFPEKLAMEGMSLQ
QGEICNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESASELLHLNLQEEAELKILSE
AATLRSIWRREQGAIDTATLEARIKVVNPEDPEPVINLYVENQADPAMRLVTEMMVLCGE
VIATFGSRNNIPLPYRGQPQSNIDTSVYAHLPEGPVRSSALVKLMRAAEIDFRKPIRHGI
LGLPGYVQFTSPIRRYMDLLAHYQVKSFLAGESLPFSAGQLEGMASIVNMNVRVARRLFS
SSLRYWILEYLRRQPKEKKYRALILRFIKDRIAAILLVEVGLQSSVWISVGAQIGDEVLV
RIEEAHPRDDVLLLKEVVI
NT seq 2400 nt   +upstreamnt  +downstreamnt
atggcggttcgagccactgtgggcagctgctcaatcttccgctccgcctcctcttccgct
tcctcccccactctccttcccttccgctgctgcccttgccatttccctactctccagttc
cgccgactctccaaattaggcattcgcttcccgatatttcggtccggtaagctagctccc
ggccatggcagcggcgttcaaagcacctccgtccacagcctcgtcgatagcgtcatggaa
gagctcggcgccctgcgcagacggagactagttcctgctgccgccaaggtggagctgaca
agtagtggcgggattgtagaggataagcttgtgagccgggcactgcagcaagggttgctg
cttgaattcaagaaggatgcagagagagtgttgctggctgttgcgcagaagcccgatggc
aagaagaactggatggtgtccgatcagaatggtgttacatcgtcgattaaaccacaacag
attacgtatattgttcccggtgttgagaattttgaccacacagatatatcagactttatt
cagaaagctcaagctaactcggatccagcactgcttgaatttgcttgggttgagctcctt
gaaaagaataagcgggtgacggcagaagaattagctgagatgatatttggtagtgtagag
cctcttgaatgctactgtgctcatctgttgctttcagaagatgaagtatacttcactgtt
ctggagacaaaaggttctcgctctgtatatggacctcgacctgctgtacaggttgaggag
ctcctgcgtaggaagctcgcaaaggaggctgctgagaaagaactgcaggagtttaaacaa
ttactgaaatctgctaaggcaatgcctttaaatgctaaacctcccaaatcttcttggttg
gctgaagagaaaatcagacacaaaattgagtctcttgaagcttatgctattgatgcttgc
acaaatgatgaccaaaggaaaacagccggaacaatcctaagaacaatggggatggtaaaa
acagcctcatcagctttgaatctcctcatagacattgggtattttcctgtacacgtgaat
cttgacctgttgaagttgaacatccgtactgatcattcagatggagttatatcagctgca
gaacatcttctgtcagattcatctgatttagatgtgattgaaaggacagatctcactcac
ttgaaggtctatgctattgatgtggatgaggctgatgagcttgatgatgccctgagtgca
acgaggctacaagatggacgcattaaaatatggattcatgttgcagatgcaactaggttt
gtccaacctgggagcatagtagacagggaggcaatgagaagaggaacttctgtattcttg
cccactgctacttatcctatgttcccggagaaacttgccatggagggaatgagtttgcaa
caaggagagatttgcaatgcggttactgtatctgtggtgctacactccgatggaagtatt
gcagaatattcagtggacaactcaatcattaaaccaacatacatgttgacatatgagagt
gcatctgagcttcttcatttgaacctgcaagaagaggctgaactgaaaatcctgtctgag
gctgcaactctccggtcaatatggcgtcgagaacagggcgcaattgacacagccacattg
gaagcacgcatcaaagtggttaatccagaggatccggagcctgtgattaatttgtatgta
gaaaaccaggcagaccctgcaatgcgacttgtcactgagatgatggtactctgcggagaa
gttatagccacttttggttctagaaataacattcctttaccctacagaggacaaccccag
tccaacatcgacacctctgtatatgcacatcttccagaaggacctgttagaagctctgct
cttgttaaactaatgcgtgctgctgaaattgatttcagaaaacctatacgtcatggaatt
ttaggacttccgggttatgttcagtttacatctcccatccgtagatatatggatctacta
gctcactatcaggtgaaatcatttctcgcaggggaatctcttcctttctcagctggtcag
ttggaggggatggcatctattgtgaacatgaatgttagagtagcaaggaggctctttagc
agcagtcttcgctactggatattagaatatctgagaaggcagccaaaagaaaaaaaatat
cgggcgctgattcttagattcattaaggatcggattgcagccatattgttagttgaggtg
ggacttcaatcttccgtgtggatatccgtgggagcccaaattggagatgaagttcttgtt
cggatagaagaagctcatccacgggatgatgtgcttttacttaaagaggttgtcatttga

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