Malus domestica (apple): 103450428
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Entry
103450428 CDS
T03194
Name
(RefSeq) transcription initiation factor IIF subunit beta
KO
K03139
transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103450428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdm03021
]
103450428
Transcription machinery [BR:
mdm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
103450428
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_beta
TFIIF_beta_N
WHD_UBR1
Cullin_AB
Calpain_III
Motif
Other DBs
NCBI-GeneID:
103450428
NCBI-ProteinID:
XP_008387994
LinkDB
All DBs
Position
15:join(1177568..1177798,1178098..1178206,1178698..1178828,1178924..1178998,1179081..1179233,1179375..1179491)
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AA seq
271 aa
AA seq
DB search
MGVEKRERDSTEEERGNSSSSTRNLDIGRAEAPVWLMKCPVVVAKSWSSHNPADPHPIAK
VVLSLDPLRADDPTAMEFKMEMPDSAAANLPKSYSLNMYKDFVPMCVFSETNQGKVSVEG
KVDHKFDMKPHGTNIEEYGKLCRERTNKSMIKNRQIQMIDNDRGVLMRPMPGMIGLVSST
SKDKKKTAPVKQSDMKRTRRDRGELEDIVFKLFEQKQPNWTLKQLVQETNQPAQFLKEIL
NELCVYNKRGTNQGTYELKPEYKKSVEDTEE
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtcgagaagagagagagagattcgacggaggaggagcgcgggaacagtagcagc
agcacccggaacttggacatagggagggcggaggctccggtgtggctgatgaagtgcccg
gtggtcgtcgccaagtcgtggagctcccacaaccccgccgatccccacccaatcgccaaa
gtcgtcctctccttggatcccctacgcgccgacgaccccactgccatggagttcaagatg
gagatgcctgactctgcagctgcaaatttgccgaaaagttattcattgaatatgtacaag
gactttgttcccatgtgcgttttctccgaaacaaatcaaggcaaagtttctgtggaaggt
aaagtggatcacaagtttgatatgaagccccacggtactaacattgaggagtatgggaag
ctgtgtcgtgaaaggacaaacaagtccatgatcaagaatagacaaatacagatgatcgat
aatgaccgaggagtacttatgaggcccatgcctgggatgattggcttggtttcatccact
tcaaaggataagaagaaaactgcaccggttaaacaatcagacatgaaaaggactagaaga
gatcgtggggagctggaggatatagtgttcaagttatttgaacaaaaacaaccaaactgg
accttgaagcagctggtgcaagaaaccaatcaacctgcgcaattcttgaaagagatactg
aatgagctgtgtgtgtacaacaaaaggggaaccaaccagggtacttatgagcttaagccg
gaatacaagaaatctgtcgaggatactgaagaataa
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