Malus domestica (apple): 103451398
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Entry
103451398 CDS
T03194
Name
(RefSeq) exosome complex component csl4
KO
K07573
exosome complex component CSL4
Organism
mdm
Malus domestica (apple)
Pathway
mdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103451398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103451398
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103451398
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
103451398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
CHASE5
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
103451398
NCBI-ProteinID:
XP_017191827
LinkDB
All DBs
Position
12:join(30802292..30802456,30803353..30803427,30803538..30803626,30803774..30803858,30804096..30804180,30804371..30804462)
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AA seq
196 aa
AA seq
DB search
MGENSEWVTPGEVLGKASKFKAGRGAYVSPDKLTVYASLTGSRRILSPPSDSPDQRPTVE
VTGHKAHGAIPEPGSVVIARVTKVMERMASADILCLGTKSVREKFSGIIRLQDVRATEID
KVDMLSSFRPGDIVRAHVLSLGDARAYYLSTAKNELGVISAQSAASGETMVPISWTEMQC
PRTGQIEQRKVAKVGG
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaatagtgagtgggtaaccccaggggaagttctcggtaaagcctccaagttc
aaagcaggcagaggtgcctacgtgtcccccgacaagctcaccgtctacgcttccctcact
gggtcccgccgtatcctatcccccccttccgactcgcccgaccagagacccactgtggaa
gtaactggtcacaaggcccatggtgccattccagagcctggatcagttgtcattgctaga
gttaccaaagtgatggaaaggatggcttctgctgatattttgtgtcttggcacgaaatct
gtgcgagaaaagtttagtggcataattaggcttcaagatgtaagagccaccgaaattgat
aaagtggatatgctttcgtcttttcgcccgggtgacattgtcagagctcatgttctgtcc
cttggagatgctagggcttattatctgtcaactgcaaagaatgaattgggtgttatttcg
gcacagagtgctgcatcaggtgaaacaatggtaccaataagctggacagagatgcagtgc
cccaggacagggcaaatcgagcaaagaaaggtcgctaaggtcggaggatga
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