KEGG   Malus domestica (apple): 103451613
Entry
103451613         CDS       T03194                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103451613
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103451613
   03012 Translation factors [BR:mdm03012]
    103451613
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103451613
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     103451613
Translation factors [BR:mdm03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    103451613
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 Dicer_dimer NACHT nSTAND3 AAA_19 ATPase T2SSE AAA_11 TFIIA
Other DBs
NCBI-GeneID: 103451613
NCBI-ProteinID: XP_008389247
LinkDB
Position
13:complement(join(2104186..2104653,2104864..2104974,2105136..2105288,2105375..2105434,2105744..2106049,2106270..2106418,2106524..2106593,2106943..2107146,2107521..2107715,2107952..2108224,2108305..2108472,2108655..2108785,2108861..2109020,2109126..2109314,2109574..2109669,2109781..2110017,2110337..2110424,2110499..2110653,2111363..2111665))
AA seq 1171 aa
MKDRPPSSYGSVYVPPHHRPRSAITTPNYTSPTSVGSKLRDNQTAAALNQRSSTIGALAY
YQNQQQQQQHFQKPKLQHSSAYDDGVSEEGSDREVQLPSYPTQSPYSSDNEWERKFTTLL
RDKEKQELVTREKKDRCDFEKIAALASRMGLYSHLYSKVAVFSKVPLPNYRFDLDDRRPQ
REVTLPHGLLRRVEGYLGEFLSQKSRTKEDLSFSISNSSGSIATDEGLFEQPESFASSKG
VMEKLLWRTSTQMRDKQQAWQESPQGRKMLELRRSLPAYKEKDALLAAISRDQVVIISGE
TGCGKTTQIPQFILESEIEAVRGAVCSIICTQPRRISAMSVSERVASERGEKLGDSVGYK
VRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLL
PRRPELRLILMSATLDSELFSSYFGRAQIIHVPGFTYPVQTHFLEDVLEITGCKLTPYNQ
IDDYGQDKMWKMSKQAPRKRKSQIAFVVEDALKAANFKGYSLQTQESLACWNPDGIGFYL
IEYLLCNICESEKPGAILVFMTGWDDINSLKEKLHANPLLGDPSRVLLLACHGSMASTEQ
RLIFDEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISK
VSAQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLNLGSISE
FLSRALQSPELLAVQNAIEYLKITGALDEKENLTVLGRYLTMLPVEPKLGKMLLLGAIFN
CLDPVLTIVSGLSVRDPFLTPFDKKDLAEAAKSQFSRDNSDHLALVRAYEGWKVAERDFA
GYDYCWKNFLSAQSMKAIDSLRKEFFSLLRDTDLVDANTTTHNAWSYDEHLVRAVICCGL
YPGICSVVHNEKSFSLKTMEDGQVLLYSNSVNARDSKIPYPWLVFNEKIKVNSVFLRDST
AVSDSVLLLFGGSFSKGDTDGHLKMLGGYLEFFMKPAVAEMYQCLKGELDQLIQIKLLNP
RMDTHSYHELLSAMRFLLSEDQGEGRFVFGRQVLALSKSKPSVVAAQPALVSRTESGPGG
DNSKSQLQTLLTRAGYNAPTYKTMQLKNSQFRATVEFNGMQIMGHPCNNKKSAEKDAAAE
AIQWLVSGTQMGHEDINHMSMMLKRSKKDHN
NT seq 3516 nt   +upstreamnt  +downstreamnt
atgaaggaccggcctccttcctcgtacggctccgtctacgtccctccccaccaccgcccc
cgctccgccatcaccacccccaattacacctcccctacttcagtcggctccaagctccgc
gacaaccagactgctgctgctcttaaccagaggagcagcaccattggtgctctggcgtac
taccagaatcagcagcagcagcagcagcattttcagaagcccaagcttcagcactcttct
gcttacgacgacggcgtttccgaggaaggctccgatcgcgaagttcagttgccgtcgtat
ccgacacagagtccttactcatctgataatgagtgggaacggaaatttaccacgctgtta
cgtgacaaggagaagcaagaattggttacgagggagaaaaaagatagatgcgactttgag
aaaatagctgctttggcaagcagaatggggctttatagccatctatattcgaaagttgct
gtttttagtaaggtcccactgccaaactacagatttgatctggatgataggcgccctcag
agagaggtgaccttgcctcatgggttgctgaggagagttgagggatatcttggagagttc
ctttcccagaagtctaggacaaaggaagatctttccttttcgatatcaaacagtagtggc
agcattgctactgatgaagggctttttgagcaaccagaatcattcgcgtcaagtaagggt
gttatggaaaagcttctttggcggacaagtacgcagatgcgtgataagcaacaagcttgg
caggaatctcctcaaggtagaaaaatgcttgaacttcgcagaagtcttcctgcttataaa
gagaaggatgcattattggcagcaatttcacgagatcaggttgttatcatatcaggtgaa
actggctgtggcaagactactcaaattccacaattcattttagaatctgagatagaagct
gttcgtggagctgtttgtagtattatatgtacacagcctagacgaatatctgctatgtct
gtttctgaaagagttgcttcagagagaggggagaaattgggtgactcggttgggtataag
gttcgcttagaaggtatgaaggggagggacactcgccttctcttttgcaccactggcatt
ttgttgagaagattgctagttgatagaaatttgaaaggtgtaactcatgtgattgttgat
gaaattcatgaacgtggaatgaatgaagattttctgcttattgttctcaaggatctcctt
cctcggcgaccagaactgaggctgattttgatgagtgcaaccctagattctgagcttttc
tcatcctactttggtagagctcagataattcatgttccaggttttacatatccagttcaa
actcattttctggaggatgttctggaaattacgggctgcaaattaactccatacaatcag
attgatgattatggtcaagataagatgtggaaaatgagcaaacaggcaccaagaaagagg
aaaagccaaattgcttttgttgttgaggatgcacttaaagcagccaattttaaggggtat
agtctacagactcaggagtctctagcatgttggaatcctgatggtattggtttttatctc
atcgagtatctcttgtgcaatatctgtgagagtgaaaagccaggtgccattctagttttt
atgactgggtgggatgacatcaattctctgaaggaaaagttacatgccaatcctctatta
ggtgatccaagccgagtcttgttactagcatgccatggttctatggcgagtactgagcag
aggttaatatttgatgagcctgaggatggagtgaggaaaatagtgctggctactaatatt
gctgagacaagcatcacgattaatgatgttgtttttgtacttgattgtggaaaggcaaaa
gagacttcatatgacgcactgaataatactccttgtttacttccttcctggatttccaag
gtttctgcccaacaaagaagaggaagagcaggacgtgtccagcccggggaatgttatcat
ctctatcctagatgtgtgtatgacgcatttgcagagtatcagttaccagagattttgagg
acacctctgcagtctctgtgtctgcaaataaaaagtttaaacctcggaagcatttctgag
ttcttatctagggctctgcagtcaccagagttacttgcggtgcaaaacgccatagagtat
ttaaagatcactggggccttggatgagaaagagaatctgactgttttaggacgctatcta
actatgcttcctgtggagccaaaacttggaaagatgctcttgctaggcgccattttcaac
tgcctggatccagttttgactattgtttctgggcttagtgtcagagatcctttcctaaca
ccatttgacaagaaagaccttgctgaggctgcaaaatctcagttttcccgagataatagt
gatcaccttgcacttgtgcgggcctatgagggctggaaggttgctgaaagagactttgct
ggatatgactattgctggaagaattttctttcagcacaatcgatgaaagctattgattcc
cttaggaaggagttcttctctttgcttagggatactgatcttgttgatgccaacaccacc
actcataacgcatggagttatgatgagcatctcgtccgtgcagttatttgctgtggcctg
tatcctggaatctgctctgttgtgcacaatgagaagtcattttcactgaaaacaatggag
gatgggcaggtgctgctatactcgaactctgtcaatgctagggattccaaaattccatat
ccgtggctggttttcaatgagaagataaaggtgaactctgttttcctacgggattcaaca
gctgtgtctgactcagtgctcctcctatttggtggaagtttttcgaaaggggataccgat
ggacacttgaaaatgctgggaggatatttggaattcttcatgaagcctgctgtagcagaa
atgtatcaatgcttaaaaggggaacttgaccagttaattcaaatcaaactactgaacccc
aggatggacacacacagttaccatgaacttctttctgcaatgcggttcctgctttcggag
gatcaaggcgaaggtagatttgtatttggccgccaggtccttgcactctcaaagtcaaag
ccatctgtggtggcagcacagccagccttggtttcaagaactgaaagtggacccgggggt
gacaattctaagagtcagctccagacattgctcacacgagcaggatacaacgctcctacc
tacaaaactatgcaactgaagaacagccagttccgagctacagtggagtttaacggaatg
caaattatgggccacccatgtaacaacaagaagagtgcagaaaaagatgcggcagcggag
gccattcagtggctggtgagtggaacacaaatgggccatgaggacatcaatcacatgtca
atgatgttaaagagaagcaaaaaggaccacaattaa

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