Malus domestica (apple): 103452178
Help
Entry
103452178 CDS
T03194
Name
(RefSeq) uncharacterized protein
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
mdm
Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103452178
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103452178
Surveillance factors
Other surveillance factors
103452178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
103452178
NCBI-ProteinID:
XP_008389915
LinkDB
All DBs
Position
13:complement(join(8803173..8803489,8803675..8803817,8803939..8804011,8804107..8806281,8806376..8807134,8807239..8807364,8807445..8807538,8807621..8808469,8808802..8808875,8808997..8809059,8810027..8810102))
Genome browser
AA seq
1582 aa
AA seq
DB search
MAEGKLDLPDDLLSCKPSDQSWTSKVEASGGNDEKKVLIGSSDDSKDPAASESSIPLSPQ
WLYAKPSESKLEMRGPSSLGNSADSNQKEGWRLEGSDDKKDWRRPAAESENSRRWREEER
ETSLLGGRRDRRKPERRVDSVPVRDTTDNRPLPASERWHDGRTSAHEARRDSKWSLRWGP
EDKEKESRTEKKTDMEKEDNHINNDNQSLGGNNRSASERESDSRDKWRPRHRDVHSGGSN
SYRAAPGFGTEKGRVEGSNLGFTLGRGRASGVGRSSAGVIGSTSSGKIGSVPGKPRHSAD
SFCYPRGKLLDIYRQRKLDLSFATMPDDMEESPPTTEVGFMEPLAFLAPDGEEEAILSDI
WKGKITSSGVVYNSFRKGRSTENSTGGGDLEAVDGVLGILPNILQEAANADDYGTSQNSG
AQMNVLDDKDANHKEWETKSSPGKDLDGLSLTFQKTNGICSDVETEDGSRQIADSSFSGH
SLSNDIEFGTSDIKSKLPDDSNTLYALGSSEQNQNNNCRVKELEGDVPPEDLCLYYLDPQ
GVVQGPYLGVDIISWFEQGFFGTNLLVRLADTPEATPFKELGEVMPHLKVWDGHRSIVNP
TSNIEESSSSLGNIESNLPSSAPVSEMTTSFGGNDLRRPLPELNSLLAQHIQLRNSEHEA
PIQLPHSRGQSFNDFDAEDEDIVFPGIPGTTSYSTARSSGTIHDSIANSIGHLPPTELTE
SGVPIQNDNKLHPFGLLWSELEGSQTKHAKPANTPSSMGRAVQFGAISDPAVLADAWSDV
HRKNSVSDTNLYQDMVAPRQLAHMKQEPNHFDLAELLAPQQIRQQQHQQRNILSSFGHLN
DAALEHLPSQNLIHQQLANHSSADLDHLLALQMQQHREAQLQQHHQLQQQQFHQQQKLLQ
EQQSQVQQVLLEQLLRGQMHDPALRQPHVDPVRANNVLEQVLLEQRRLHELQQRSHHFPR
HVDPSLEQLIQAKFGQSSPQGHQADFLDLLSRAQHEQIQSLEDQMQARQLPVGMRQRVEE
ERHGGAVWPADESNQFLRTHGGAQRAHSSGFSPLDFYQRQQRPSHEEQLSQLDRNLSLQD
RLQQGFYEPGSHPFEQSMSLPAGAQGMNLDAVNAMARAQGLDMHDSLGRMPSGGQLGTFS
SGIHSHNPHHPLPNQFHASHLDAIEGHWTEKNEHLDNDWMDSRFQQLHINAERQKRESEI
KIPSQDRALFMSDGLNEEHSKRLLMELLHKKSGHQPAESLNVNNGMFSDKRPSSGMYSGS
SSSNHPFSLHADHEAGLNNSFRVGSYGSDHMELPQEERASSVESNEKLMHRSDSGAMVER
ESFLDGINATTQPIYTNSNMIIKSSINKEVLELDGWKRGTKSEGIIRGQAFDIRERMVEQ
AGLGAPDYEERSAIALNMRSSSGVSGGNIGFHSDKIGRSNSFAEETTRERFPAPSKSQDN
ILLRRPPVSSVSASQEGLSELLPNPVFRGKSASAAPDGGRQDPVNHGSDALPPSSKKEMH
FRHTSSTSDADVSEASFMDMLKSNTKKTAPMDAHAAAGEDAMQGNRSGKKKGKKGRQIDP
ALLGFKVTSNRIMRGEIQRMDD
NT seq
4749 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaggcaagctcgatcttcccgacgatctcctctcctgtaagccgtccgatcag
tcctggacctccaaagttgaagcctctggaggaaatgatgaaaaaaaggtgcttatcggg
tcatctgatgactcaaaagatccagctgcctcagagagcagcatacctttgtccccccag
tggctttatgccaaacccagtgagtctaagttggaaatgcgtggcccaagttccctcgga
aactctgctgatagcaaccagaaggaaggttggcgtttggaaggatctgatgacaaaaaa
gattggaggcggcctgccgctgaaagtgaaaatagccgtcgttggcgtgaagaggaaaga
gaaactagcttgcttggtggtagacgagaccgaaggaaaccagaacgccgtgttgacagt
gttccagtgagagacacaactgacaataggccactgcctgcatctgaaaggtggcatgat
ggccgtacctctgcacatgaagcacgacgtgatagcaaatggtcattgaggtggggtcct
gaagacaaagaaaaggagtctcgaactgaaaagaaaacagatatggagaaggaagataat
cacattaacaatgacaaccaatcccttggtggtaataaccgttcagcttctgagcgtgag
tcagattctcgggataaatggaggccacgccatagggatgttcactccggtggatcaaat
tcctaccgtgctgcacctggatttggaactgaaaaaggaagggtagagggttcaaatttg
ggatttacccttggaagagggagggcatctggtgttgggagatcatctgcaggcgttatt
ggctctacttcttctggaaaaattggaagtgtccctggtaaacctaggcactcagctgat
agtttttgttacccaaggggaaagcttcttgacatttatcgtcagcgaaagcttgatctg
tcatttgctaccatgccagatgacatggaagaatcgccccctacaactgaagtaggcttt
atggaaccattagcttttcttgcccctgatggcgaagaggaggccatccttagtgacata
tggaagggaaagattacaagtagtggggtagtatacaattcatttagaaagggaagatca
actgaaaacagtacaggtgggggagacttggaagctgttgatggagttctgggtatttta
cccaatatcttgcaggaggctgcaaatgctgatgattatgggacttcacagaactctggt
gcacaaatgaatgtgctagatgacaaagatgccaatcataaagaatgggaaacaaaatct
agtccaggaaaggaccttgatggattgtctttaacatttcagaaaactaatggtatctgc
agtgatgttgagactgaagatggcagtaggcaaattgcagattcttctttttccggccat
tctttgtctaatgacattgagtttggcacttctgacataaaatcaaaacttcctgatgat
tcaaatactctatatgctcttggctcatctgagcagaatcagaataacaactgtcgggtg
aaagagttagaaggggacgtccctcctgaggatttatgtttgtattaccttgatcctcaa
ggggtggttcagggaccatatttgggggtagacattatttcatggtttgaacaagggttt
tttgggacaaacttgcttgttcgcttggcagatactcctgaagcaacacctttcaaagaa
ttgggagaggtcatgccacatctgaaagtttgggatgggcataggagtattgtaaatccg
acttctaatatagaagaatcaagtagctccttagggaacatagagtctaacttaccttct
tcggctccagtttcagaaatgactacttcatttggagggaatgacttaaggcggccgttg
cctgaactaaacagccttttagctcagcatattcaacttagaaattctgagcatgaagct
ccaatacaactgccacattccaggggtcaaagctttaatgattttgatgccgaagatgaa
gatatcgtgtttccaggaatacctggaaccaccagctattctactgcaagatcttctgga
accattcatgattctattgcaaattctattggccaccttcctccaactgagttgacggaa
tccggtgtgcccattcagaatgataacaagttgcacccctttggcttgctttggtctgag
ctagaaggcagtcaaacgaaacatgccaagccagccaatacgccttctagcatggggagg
gctgttcaatttggtgcaatttctgatccagcagttcttgctgatgcatggtccgatgtt
catagaaaaaattcagtctctgatacaaacctctatcaggacatggtagctcctcgccaa
ttggcacacatgaaacaggaacccaatcattttgatttagctgagctgcttgcaccacag
caaattcgacagcagcagcaccaacagcggaatattttgtctagttttggacacttgaat
gatgcagcattagagcatttgccaagtcagaatcttatccaccaacagttagccaaccat
tcttcagcagatctggatcaccttttggcacttcagatgcaacagcaccgggaggctcag
ctccagcaacatcatcaactgcaacagcagcagtttcatcaacagcagaagcttttacag
gagcaacagtcccaagtacaacaggtgcttctggaacaactactgcgtggtcaaatgcat
gatcctgcgcttaggcagccacacgttgatcctgtcagagcaaacaacgttcttgaacag
gttctattagagcagcgccgtctgcatgaactccaacaacggtctcaccattttccaagg
catgttgatccatctttggagcagcttatccaagcgaagtttggtcaatcatcaccacaa
ggacatcaagcagattttcttgatctactgtctcgtgcgcagcatgaacaaattcaatca
ttggaagatcagatgcaagccaggcagttaccagtgggaatgaggcagagggtggaagaa
gagagacacggtggtgccgtctggccagcggatgaatcaaatcagtttttgaggacccat
ggtggtgctcagcgagctcactcttccggatttagccctttagatttttatcagaggcaa
cagaggccatcccatgaggagcagcttagtcaacttgaccgtaatctttcattgcaggat
cgacttcagcaagggttttatgagcctggctctcatccgtttgagcagtctatgtcactg
cctgctggggcacaagggatgaacttggatgctgtaaatgctatggctcgtgctcagggt
ttggatatgcatgattcccttggacggatgccatcgggtggtcaattgggaacattttca
tccggcatccattctcataatcctcatcaccctcttcctaaccaatttcatgcttcacat
ttggatgcaattgagggtcactggaccgagaagaatgaacacctagacaatgattggatg
gactctcggtttcagcagttgcatattaatgctgagcggcagaaaagggagtcagaaatc
aaaattccttctcaagatcgagctttatttatgtcagatggattgaatgaagagcattca
aagagactattgatggagttactccataaaaaatcaggccatcaacctgccgagtcattg
aatgtcaataatggcatgttctctgataaaaggccgtcatctggcatgtactctggttca
agctcttctaatcacccatttagccttcatgcagaccatgaagcaggtctaaataattca
tttcgagtaggatcctatggttcagatcatatggaactcccacaggaagagcgggccagc
agcgtggaaagcaatgaaaagctgatgcacagatctgattctggagcaatggttgagaga
gagtcattcttggatggcattaatgctacaactcagccaatttacacaaattctaacatg
attatcaagtcttctatcaataaagaggttttggagttggacgggtggaagcgtgggacg
aagagtgaggggatcattaggggccaagcgtttgatattcgagaacgaatggtcgaacaa
gcagggttgggtgctccagattatgaggagaggtcagcaattgcccttaacatgcgatcg
tcatctggtgtttcaggtggtaatataggctttcatagcgacaagattggccgaagtaat
tcatttgcggaagaaacgaccagggaacggtttccagccccatccaaaagtcaagataat
attctgctgagacgacctcctgtctcaagtgtttcagcatcccaagaaggattgtcagaa
ctgctccctaatccagtcttccgaggaaaaagtgcaagtgctgctccagatggggggagg
caagatccagtaaaccacggttctgatgccttgccgccatcttcaaagaaagaaatgcat
tttcgccatacttcatccaccagcgatgctgatgtgtcagaggcatcgtttatggatatg
cttaagagcaataccaagaagacagctccgatggatgcccatgcggcagcaggagaagat
gcaatgcaagggaaccgaagcggcaaaaagaaggggaagaaagggaggcaaattgatccc
gctctcctcggttttaaagttaccagcaatcggataatgaggggcgaaatccaacgcatg
gatgattag
DBGET
integrated database retrieval system
