Malus domestica (apple): 103453144
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Entry
103453144 CDS
T03194
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
mdm
Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103453144
03036 Chromosome and associated proteins [BR:
mdm03036
]
103453144
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
103453144
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103453144
Chromosome and associated proteins [BR:
mdm03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
103453144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
PhoH
UvrD_C
DEAD
ATPase_2
AAA_16
Helicase_RecD
Cep192_D4
SLFN-g3_helicase
AAA
KCT2
Mg_chelatase
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
103453144
NCBI-ProteinID:
XP_028946986
LinkDB
All DBs
Position
13:complement(join(16611857..16612054,16612173..16613630,16614085..16614252,16614326..16615117))
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AA seq
871 aa
AA seq
DB search
MDSVGDKWDDEERSVIGDKGEIRYIDFDHDKSVRNYNPNEEGPIIVSVPFPFVDGKQGGK
PQSVVVGETAMDKITLKNTTTDPVEWGVTIYASNPEDSFKLSLMEPPTADSDLETIQAFL
ECTSLEDRVLHPGDTLTVWLSCKPKEIGVHTSIVHFDLEADVIERVVFLLAEDKISQSLA
SIRPYTRGIKKKPLNVESHHGSVRPSRKTYRMYKNRLPRYDIPKDIRSLIESGQIPSVVT
EGLTRGNYQHFFKNLLIMEEIALEESMRSYDMEGVPLRKRGQQYLSLEVPGLAERRPSLV
QGDYVFAKLEYEDERSLPYKGHIYRVEADDVYLKFAPEFHSHHRDGNLYKVQFTYNRISM
RRLYQAVDATEDLDVGFLFPSESTQRRMIRAMRMVPISCTLNEEQRRSVEMILGCKGGPP
YVIYGPPGTGKTMTLVETILQLYTTRKRDRILVCAPSNSAADHILEKLLNANADVVVQEF
DILRLNASSRPYEDVNPDLIDYCFYDDDAFTCPELNALLRYRIIICTYTSASLIYAEGVR
RGYFSHIILDEAGQASEPETMIPISSLYKQNTVVVLAGDPMQLGPIINSREAETFGLGKS
YLERLYECDFYRNGDRNYVTKLVKNYRSHPEILHLPNELFYGRELIACKDDSVSFMARVD
LLPNKDFPVLFFGIQGCDEREGCNPSWFNRTEASKVVEITKRLTAQRNLSEEDIGIITPY
RQQVLKLKKAFENESMPNIKIGSVEQFQGQERQVIIISTVRSTIKHNEFDKTYCLGFLSN
PKRFNVAITRAKALLIVIGNPHIITKDRNWNKLLWRCADNSSYQGCSPPERQEDDEDTSF
SIDDGQPEEFLQTEVPQPAGVGEAEWSDWNI
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggattcagttggtgataagtgggatgatgaagaacgctctgtaattggagacaaggga
gaaatccgatacatagatttcgatcatgataaatcggtgcgtaattacaatcctaatgaa
gagggtccaattattgtttcagttccattcccttttgtggatggaaagcaaggtggaaag
cctcaatcagtagttgtaggagaaacagctatggataagataactctgaagaacaccacc
actgatccagtggagtggggtgttacaatatatgcgtcgaatccagaggactcattcaag
ctttctctgatggaacctccaactgccgactctgatttggaaaccatccaagccttcctt
gagtgtacttccctggaggacagagtgctgcatccaggagatactctgactgtatggcta
tcgtgcaagcccaaggaaattggagtgcacacctcaattgtgcattttgatcttgaggcg
gacgtgattgaacgtgttgtctttctattggcagaagataagatatcccagtctttagcc
tctataaggccatacacaagaggcattaaaaagaaacctcttaatgtggaatctcatcat
gggtctgtacgtccgagtagaaaaacatatcgaatgtacaaaaataggcttcctcgatat
gacattccaaaggacatcagaagcttgattgagagtgggcagattccatctgttgtgact
gaaggtcttacaagagggaactatcaacatttcttcaaaaatttactcatcatggaggaa
atagcactagaggaaagcatgagaagttatgatatggaaggcgttcctttgaggaagagg
ggacagcaatatttgtcccttgaagtgccagggcttgctgagagaaggccttcacttgtt
caaggggattatgtttttgccaagcttgagtatgaagatgagagaagccttccatataag
ggtcatatctaccgtgtcgaggctgatgatgtttacttgaagtttgccccagaatttcat
tcacatcatagagacggtaacctttataaggtacaattcacatataatcgaatcagcatg
agaaggttatatcaagctgttgatgctacagaagatttagatgtagggttcctttttcca
tctgagtccactcaaagaaggatgattagagccatgcgaatggtgcctatatcgtgtacc
cttaatgaggagcagaggcgctcagttgagatgatccttggctgcaaaggagggccacct
tatgtaatttacggccctcctggaacaggtaagactatgacattagttgaaacaatcctg
caactctacacaacccggaagagagatcgaatccttgtttgtgctccttcaaatagcgca
gcagaccacattctggagaaactgctcaatgcaaatgctgatgtcgtagttcaagagttt
gatatattgaggctcaatgcatcttcccgcccttatgaagatgtcaatcccgaccttatt
gactactgcttctatgatgatgatgccttcacctgtcctgaactcaatgccctcttgaga
tatcggatcatcatatgcacctatacaagcgcctccttgatttatgctgaaggtgtccgt
cgaggctacttctctcatattatcttggacgaggcaggccaagcttcagaaccagagacc
atgatcccgatatcgagtctctataaacagaatacagtagttgttcttgctggtgacccg
atgcaattaggtccaatcataaactccagagaagcagaaacctttggtttagggaaatca
tacttagagaggttgtacgaatgtgatttttatagaaatggggacagaaattatgtaaca
aagttggttaaaaactatcgatctcacccggaaattttgcatctccctaatgagctgttc
tatggacgagagttgattgcttgcaaggatgactcagtttccttcatggcaagggtggac
cttcttcctaacaaggatttccctgttcttttctttggtatccaaggctgtgatgagagg
gaagggtgtaatccatcatggtttaatcggactgaggcaagcaaggtagtagagatcact
aagcggttgactgcacaaaggaatttgagcgaggaagatattgggatcataacaccttat
cggcagcaagtgctaaaactgaagaaagctttcgagaatgagagcatgcctaatatcaag
attggaagtgtggagcaattccagggacaggagaggcaagttattataatatcaactgtc
cgatcaacaatcaaacacaatgagtttgacaaaacgtactgcttgggatttttgagcaac
ccaaaaaggtttaatgtggctattactcgtgctaaagctttgctaattgtaattggtaac
ccgcacatcatcaccaaggaccggaactggaacaagctgctttggcgttgtgctgacaac
tcatcctatcagggttgtagtccccctgagagacaggaagatgatgaagatacatctttc
tctatagatgatgggcagccggaagaattcttgcaaacagaagtcccccagcctgctggg
gttggtgaagctgaatggtctgattggaacatataa
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