KEGG   Malus domestica (apple): 103453934
Entry
103453934         CDS       T03194                                 
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
mdm  Malus domestica (apple)
Pathway
mdm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103453934
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103453934
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103453934
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     103453934
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     103453934
SSDB
Motif
Pfam: zf_PCFS4 CID
Other DBs
NCBI-GeneID: 103453934
NCBI-ProteinID: XP_008391749
LinkDB
Position
14:join(1568031..1568396,1570095..1570196,1570445..1570702,1571346..1571762,1572062..1573993,1574117..1574131)
AA seq 1029 aa
MEMESSRRPFSGSNEPGLKKPRLAENPNGRAFGQRPGGGANPVLSRFRVSDRDTGSDDPN
RGGGGYVPQPLQHQELVSQYKTALAELTFNSKPIITNLTIIAGENVHAAKAVAATVCSHI
IEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVEPPIHQSMRHLFGTW
KGVFPAQTLQMIEKELGFSSTANGSSSGAATSRPDSQSQRQAHSIHVNPKYLERQRLQQP
TRNLQQSNADALSERVHEKNIGAEYGEYEYGSDLPRNSNPGIGRIGGKITETLPTQRNGV
NIRHGLANYSAPKSANADPRLKAAPGIATRNGGGLSSSWKNSEEEEFMWDDMNSRLTDHG
PSDISSNSRKDHWASDDSERLGFGGHFRKPKSVNDYASTADLDTSADLTEQKDLSALGHL
MSSPWTLQDSIGVDRLTPSGTPVISSVHSDRYASSLSGLSTSGDYSVARMGSRAQVASSR
IGASSLGFSAASGPTGALGKQQQLQSVRAASPSGQSLMHQYSPSPTSTVQHPRHHLQSLA
EQDLTEDPLPIPTPNARLGSKAKSQPQDLSLSIPAIQSRHKYASRQQPDSIESESFGHTK
KPPVLPVSTFSTPSTVGDSIPDHSNVIAAETSGQLSTSSLLAAVMKTGILSDKSITGGLP
NLNIRDMGHIPSQPGVQSPFPSGPPPTQVAVPGSKVASAFTSGHLSGDNSPASSNVSQKK
VGHLPLPHSQPPSSLEGSVSASSSTVVNNSSDPISSLLSSLVAKGLISASKSESLTPVPS
QKPTELQNKSLGGPATSLVSVSPVSVSASLPVSSRTDDASLPEPVAKTSAALPQITKTEI
RNLIGVEFKPDKIREFHPAVIEELFNDLPHKCSICGLKLKLRERLERHLEWHASKNPEAN
GSAMASRKWYPNLTSWVAGKAGPPLVPEANNSIDEPNETIDIDEPMVPADESQCACVICG
DIFEDFYCQERDEWMFKGASYMSIPSGAGEMETTEESVLKGPIVHVNCTVESSLSDLGLP
GHVKLEPEI
NT seq 3090 nt   +upstreamnt  +downstreamnt
atggaaatggagagctcgcgtaggccgtttagcggatcgaatgaaccaggcttgaagaaa
ccccgattggccgaaaacccgaatggacgagcttttgggcagagacctggtgggggagct
aatccagtgctgtcaagattcagagtgagtgatagagacaccgggagcgatgacccgaat
cgcgggggtgggggctatgtgccgcagccactgcagcatcaggagcttgtgagccagtac
aagacggcgttggcggagctcaccttcaattcaaagccaattattaccaatctgacgata
attgccggcgagaacgtccacgcagcaaaggcggtggcggcaactgtatgcagccacatt
attgaggttcctagcgagcagaagttaccatcactttatcttttggacagtattgtaaag
aatatcggaagggattatatcaaatattttgctgtcagactccctgaggtgttctgcaag
gcatataggcaggttgaacctcctatacatcaaagtatgcggcatctttttggaacatgg
aaaggagtgtttcctgctcagacacttcagatgattgagaaagaacttggattttcttct
acggcaaatggttcatcctctggagcagcaacatcaagaccagattcgcagtcacagcga
caagcacatagcattcatgtgaatcccaaatatttggaaaggcaacgtcttcagcagcca
actaggaatttgcagcagtccaatgcagatgcactaagcgagcgtgttcatgagaagaac
attggtgctgaatatggagaatatgaatatggttctgatcttcccaggaattcaaaccca
ggaattggaagaattggtgggaagattacagaaacactacccacccaaagaaatggtgtt
aatatcaggcatggacttgcaaattactcggcacctaaatctgctaatgctgatcctcgc
ttaaaggcagcaccaggcattgcaactagaaacggtggtgggctttctagtagctggaag
aattctgaggaagaggagttcatgtgggatgatatgaactcaagattaacagatcatggc
ccgtcagatatttctagtaactcaagaaaagatcactgggcctctgatgattcagagaga
ttggggtttggaggtcattttcgtaaaccaaaaagtgtaaatgattatgcatcaacagct
gatctggatacctctgctgaccttactgaacagaaggacctatctgctcttggtcacctg
atgtcatcaccttggacattgcaggactctatcggtgttgacaggctgaccccttctggt
actcctgtcattagttcggttcactcagatcgttatgcttcaagtttaagtgggctatca
acaagtggagattattctgtggccaggatgggaagtagagcacaagtagcatcttctcgc
attggagcgtcaagtctcgggtttagtgcagcatcagggcccactggagctttagggaaa
cagcagcaacttcagtctgtgagagctgcatcaccatctgggcagtcactgatgcaccag
tattctccctcacctacatcaacagtacaacaccctcgtcatcatttgcaaagtttagct
gagcaagaccttactgaggaccctttgccaatcccaactcccaatgctcgactgggtagc
aaagcaaaatcacagcctcaagatttatctttgtcaattcctgccatccaatcaaggcac
aaatatgcctctcgacaacaaccggacagtatagagtctgaatctttcggtcacactaag
aagccccctgtgctaccggtctccactttttcaactccgtcaactgttggagattctata
ccagatcattcaaatgtcattgctgcagaaacctcaggacagttgagcactagtagtttg
ttggctgccgttatgaagactggaattttatctgacaaatcaattactggtggcctacca
aatttgaatattcgggacatgggacatattccatcacagccaggtgttcaatctcccttt
ccaagtggacctccccctactcaggttgcagtcccagggtccaaggttgcctcagcattt
acatcaggtcacctttctggtgataactcaccagcttcctcaaatgtatcacagaagaag
gtaggccatctgccacttccacatagccaacctccttcatctctcgagggcagtgtgtca
gcaagttcttcaactgtggtgaataattcctcggatccaatttctagccttttaagctcc
ttagttgcaaagggtttgatatctgcatcaaagtcagagtcgctcactcctgtgccatcc
caaaagccaactgaactgcaaaacaagagccttggtggacctgccacaagtttagtgtca
gtgtctccagtttcagtttcagcaagtcttcctgtttcatctcgaactgatgatgcatct
ctcccagaacctgtagctaaaacatctgctgccttacctcaaattaccaagacagaaata
agaaacctcattggcgttgagtttaagccagataaaatccgagaattccatccagccgtg
attgaggaactttttaatgaccttccacataagtgtagcatatgtggccttaagctcaaa
cttagagaacggcttgagagacacttggaatggcatgcttcgaaaaatcccgaagccaat
ggatcagccatggcatcaaggaagtggtatccaaatttaaccagctgggttgctggaaaa
gcaggaccccctttggtacctgaggccaacaattcaatagacgagcctaatgagacgatt
gacattgatgagcccatggttcccgcagacgaaagccaatgtgcatgtgttatatgtggc
gatatttttgaagatttttattgtcaagaaagggatgaatggatgttcaaaggagcttcg
tacatgagtattccatctggggccggtgagatggaaaccacagaggagagtgttttgaaa
ggtcccattgtgcatgtaaattgtacggtggaaagttcactctctgatttgggattgccg
ggccatgttaaattggaaccggaaatttag

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