KEGG   Malus domestica (apple): 103454348
Entry
103454348         CDS       T03194                                 
Name
(RefSeq) vacuolar sorting protein 18
  KO
K20181  vacuolar protein sorting-associated protein 18
Organism
mdm  Malus domestica (apple)
Pathway
mdm04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    103454348
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mdm04131]
    103454348
Membrane trafficking [BR:mdm04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    103454348
   Hops complex
    103454348
SSDB
Motif
Pfam: Pep3_Vps18 Clathrin zf-RING_Vps41 zf-RING_11 zf_RING_Vps8 zf-rbx1 zf-RING_UBOX zf_RING_Vps8_fungal zf-C3HC4 zf-C3HC4_2 zf-RING_2 Nup54_57_C zf-ANAPC11 zf-RING_5
Other DBs
NCBI-GeneID: 103454348
NCBI-ProteinID: XP_070668060
LinkDB
Position
14:complement(join(7349141..7349314,7349607..7349723,7349956..7350117,7350218..7350373,7350808..7351035,7351434..7351622,7352067..7352172,7352598..7352728,7352867..7352929,7353105..7353183,7353444..7353586,7353875..7353982,7354072..7354131,7354699..7354755,7354913..7355032,7355131..7355274,7355485..7355629,7355818..7355919,7356113..7356180,7356277..7356372,7356473..7356612,7356721..7356933,7357336..7357498))
AA seq 987 aa
MDSGRQVFTVDLLERYAAKGRGNITYMATGNDVILLGTSKGWIIRHDFGVGDSFDIDLSV
GRPGEQSIHRVFVDPGGSHCIATVVGSGGADTFYTHAKWTKPRLLTKLKGLVVNAVAWNR
QQITEASTKEVILGTDNGQLYEMAVDEKDKKEKYVKFLFELLELPEAFMSLQMEMATILS
GTRYYVMAVTPTRLYSFTGIGSLETVFAGYSEQTVHFMELPGEIPNSELHFYIKQRRAIH
FAWLSGAGIYHGGLNFGAQHSSPDGDENFVENKALLNYSTLSEGSEAVKPSSMAVSEFHF
LLLIGNRVKVVNRISEQTIEELQFEQTPEAVSRGVTGLCSDATAGLFYAYDQNSVFQVSV
NDEGRDMWKVYLDMKEYAAALANCRDPLQRDQVYLVQAEAAFAAKDYLRAASFYAKINYI
LSFEEISLKFITVNEQDALRTFLLRKLDSLAVDDKCQVTMISTWATELYLDKINRLLLED
DTAVDNRNSEYHLIIKEFRAFLSDSKVVLDEATTMRLLESYGRVEELVFFASLKEQYEIV
VHHYIQQGEAKKALEVLQKPTVPIDLQYKFAPDLIMLDAYEAVESWMTTNNLNPRKLIPA
MMRYSSEPHARNETHEVIKYLEYCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQFKF
GKGREIGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEAD
KVEDDEDLRKKLWLMVAKHVIEQEKGAKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNNQIEELKQEMNDATHGADNIRNDISALAQRYAVIDRDEECGVCR
RKILTVGREYQLARGYASVGQMAPFYVFPCGHAFHAECLIAHVTRSTNEAQAEYILDLQK
QLTLLDGEARKDSNGSLTEETITSMAPVDKLRSQLDDAVASECPFCGDLMIREISLPFIL
PEEQQQNTSWEIKSHNLGHQRSLGLSL
NT seq 2964 nt   +upstreamnt  +downstreamnt
atggattcagggaggcaggtgttcacggtggatcttctggaacgatatgctgccaagggg
cgcggaaatattacctatatggctactggaaacgacgtcattttgctcggaaccagtaaa
ggttggatcattcgacacgatttcggcgtcggcgattcgtttgatattgatctttcggtg
ggtcgtcctggggagcaatccatccatagagtttttgttgatcctggagggagccactgc
attgccaccgttgttgggagtgggggtgctgatacgttctatactcatgcaaaatggacc
aagccccgtcttttaaccaagctaaaaggtcttgtcgtgaatgccgttgcctggaacaga
caacagattacagaagcttcaacaaaggaagtcattctcggtaccgacaacggccaactt
tatgaaatggcagtcgacgagaaggataagaaggagaaatacgtaaagtttttgttcgaa
ttattggaacttccagaggctttcatgagtttgcagatggaaatggcaaccattctcagt
gggactagatactatgtaatggctgtaactcctacaagactctattcttttactggtatt
ggatcactagaaactgtttttgctggttactcggaacaaacagtgcatttcatggaactt
cctggtgaaattcctaacagtgaattgcatttctatatcaagcaaagaagagcaatacat
tttgcatggctttctggtgctggtatatatcatggtggtttaaattttggagcacaacat
agttctcctgatggagatgaaaattttgtggagaacaaggctcttttgaactattcaact
ttgagtgagggttctgaagcggtgaaacccagttctatggctgtttcagaatttcatttc
ttgcttcttatcgggaatagggttaaggttgtaaatagaataagtgagcaaactattgag
gaacttcagtttgagcaaacacctgaagcagtttcaaggggtgtcactggattgtgtagt
gatgccactgctgggttgttctatgcatatgatcaaaactctgtatttcaggtgtctgtt
aatgatgaaggccgagacatgtggaaagtttacctggacatgaaggagtacgctgctgct
ttggcaaattgccgcgacccacttcagagggaccaagtatatttggtgcaggctgaagct
gcatttgccgccaaggattatcttagagcagcatcattctatgcaaaaattaattacata
ttgtcgttcgaggagatcagtttgaagtttatcactgtaaatgaacaggatgccttaaga
acctttctattgcggaaacttgatagccttgcggtggatgacaaatgccaagtaacaatg
atttcgacgtgggcaactgaactgtacttggataagataaatcgtctactattggaagat
gatactgcagtggataatcgtaattcagagtaccacttgatcattaaagagtttcgtgca
tttcttagtgactccaaggttgttttggatgaggcaactaccatgagacttttagaaagt
tatggccgagtcgaagagttggttttttttgctagtctgaaggaacagtatgaaattgta
gtccaccattatattcagcaaggagaggcaaagaaagcattggaggtgctccaaaaacct
actgttcctatagatcttcagtacaagtttgcaccagacctaatcatgcttgatgcatat
gaagctgtagagtcatggatgactacaaacaacctcaatccaaggaaactcattcctgca
atgatgcgttattcaagtgaaccacatgcaagaaatgaaacacacgaagtcatcaaatat
ttggaatactgtgttcatcgtttgcataatgaggatcctggtgttcacaacttgctatta
tcactatatgccaaacaggaagacgacagtgcacttttgcgtttccttcaattcaaattc
ggaaaaggacgggaaattggcccagagttcttctatgatcccaagtatgctttacgcctt
tgcctcaaggaaaagcgaatgcgtgcctgtgttcatatatatagtatgatgtccatgcat
gaagaagcagttgctcttgccctgcaggttgatcctgagcttgctatggctgaggctgac
aaggttgaagatgatgaggacctgagaaagaagctttggctcatggttgcgaagcatgtt
atagaacaggaaaagggagctaaaagggagaacattcggaaggcaatagcatttcttaaa
gaaactgatggccttttaaagatagaggatatattaccattctttccagactttgccctc
attgatgacttcaaggaggcaatttgctcatcattagaggattacaacaatcaaattgaa
gaactgaagcaagagatgaatgatgcgacacatggtgccgataacattagaaatgacatt
agtgcacttgctcaaagatatgctgtgattgatcgtgatgaagaatgcggggtttgtcgg
cgtaagattttaactgtgggtagggagtatcagttggctagaggctatgcatccgtaggc
caaatggctccattctatgtgtttccatgcggacatgccttccatgccgaatgcctgatt
gcccacgtcacacgtagtacaaatgaagctcaagcagagtatatactggatctgcagaag
cagcttactctacttgacggggaagctaggaaggattcaaatggtagccttactgaggaa
accataacaagcatggcccccgtagataagctgcggtcgcagttggatgatgcagtggca
agcgaatgcccattttgtggggacctaatgatccgtgagatctctctacctttcatcctt
ccagaggagcaacagcagaatacatcatgggagataaagtcacataatcttggacaccag
aggagcctgggtttatctttatga

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