KEGG   Malus domestica (apple): 103455303
Entry
103455303         CDS       T03194                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
mdm  Malus domestica (apple)
Pathway
mdm04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    103455303
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103455303
   03009 Ribosome biogenesis [BR:mdm03009]
    103455303
   04131 Membrane trafficking [BR:mdm04131]
    103455303
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mdm04147]
    103455303
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     103455303
Ribosome biogenesis [BR:mdm03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    103455303
Membrane trafficking [BR:mdm04131]
 SNARE
  SNARE associated proteins
   Others
    103455303
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    103455303
Exosome [BR:mdm04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   103455303
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_2 AAA_5 CDC48_2 AAA_33 TIP49 AAA_14 AAA_22 NPHP3_N RNA_helicase AAA_28 Parvo_NS1 AAA_17 Mg_chelatase nSTAND3 AAA_18 AAA_lid_PRS2_C IstB_IS21 AAA_7 ABC_tran Vps4_C ATPase_2 Viral_helicase1 NACHT AAA_24 TsaE DUF815 NB-ARC Sigma54_activat ResIII Zeta_toxin SLFN-g3_helicase Zot
Other DBs
NCBI-GeneID: 103455303
NCBI-ProteinID: XP_008393112
LinkDB
Position
14:complement(join(26103332..26103634,26103915..26104274,26104410..26104691,26104774..26104845,26104978..26105199,26105298..26106064,26106181..26106409,26106511..26106676,26107289..26107347))
AA seq 819 aa
MAPLSPSAPDRSQPSSSSDPKSNKKDFSTAILERKKSPNRLVVDEAVNDDNSVISLHPAA
MEKLQFFRGDTVLIKGKKRRDTICIIIADDECEEPKIRMNKVVRANLRVRLGDVVSVHPC
PYVKYGKKVHILPIDDTIEGVTGSLFDAYLKPYFVDSYRPTRKGDLFLVRGMMRSVEFKV
METDPAEYCIVAPDTEIFCEGEPVKREDEERLEDVGYDDVGGVRKQMAQIRELVELPLRH
PQLFKSIGVKPPKGILLYGPPGTGKTLIARAVANETGVFFVLINGPEIMSKMAGESESNL
RKVFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGA
TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKRMKLADDVDLERVAKDTHGF
VGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTSLSSTNPSALRE
TVVEVPNVSWDAIGGLDNVKRELQETVSIPVEHPEMFEKFGMSPSKGVLFYGPPGCGKTL
LAKAIASECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR
GNSVGDAGGAGDRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP
LPDEASRLQIFKACLRKSPISKDIDLAALARYTHGFSGADITEICQRACKYAIREDIEKD
IERERRKNANPEAMEEDEIDEVAEIKPAHFEESMKYARRSVSDADIKKYQLFAQTLQQSR
GFGSEFRFPAQQTENNAGEAALSPFSSAAVAGEEADLYD
NT seq 2460 nt   +upstreamnt  +downstreamnt
atggcgcctctgagtccatctgctcctgatcgttctcagccctcttcgtcttcggacccg
aaaagcaacaagaaagatttttcgactgctattttggaacgaaagaagtctcctaatcga
cttgttgtcgatgaagctgtcaatgatgataattctgtgatttccttgcaccctgctgca
atggagaagcttcagtttttccgtggagacactgttttaattaagggcaagaaaaggaga
gacacaatttgcattattattgccgatgatgaatgcgaggaaccgaaaatcagaatgaac
aaagttgtgagagctaatcttagggttcgccttggagatgttgtgtctgttcatccctgc
ccttatgtcaagtatggaaagaaggttcacatccttccaatcgatgatacaattgaagga
gtgacaggaagcttattcgatgcatatttgaagccatacttcgttgattcttaccggcct
acgaggaagggtgatcttttcctggttcggggcatgatgcgaagcgttgagttcaaggtc
atggagacagaccctgctgagtattgcattgttgcaccggatactgagattttctgtgag
ggagagcctgtcaaacgtgaggacgaggaaagactagaggatgtgggatatgatgatgtt
ggaggtgttagaaagcaaatggcccagatacgggagttagtagaactgcctcttagacat
ccgcagctcttcaaatcgattggagttaaacccccgaagggcattttactctatgggcca
cccgggactggaaaaactttgattgcaagggctgtagcgaatgagactggagtgttcttt
gttttgatcaatggacctgaaataatgtccaagatggcaggtgaaagtgaaagcaacttg
aggaaggtgtttgaggaagccgaaaagaatgcaccctcaatcatttttattgatgagata
gattctattgctccaaagagagaaaagacccacggtgaagtggaaaggcgtatagtttcc
cagctcctgactttaatggacggccttaagtcccgtgcgcatgtcattgtcatgggagca
acgaataggccaaacagcatcgaccctgctctgaggagatttggaagattcgatagagag
attgacattggcgtgccggatgaagttggaagattggaagttttacgaatccatacaaag
aggatgaaacttgcagatgatgttgatctcgaaagagttgcaaaagatacccatggtttt
gttggtgcagatcttgctgctctctgcacagaggccgcacttcagtgcatccgcgaaaaa
atggatgttattgatttggaagacgaaacgattgatgctgaggtgttgaattcgatggct
gtgacgaatgaacactttcagacctcattgtcctctacaaatccttctgccttgcgcgaa
actgttgtggaggtaccaaatgtttcgtgggatgccattggtgggttggacaacgtcaaa
agagaacttcaagagactgtttcaatccccgtggagcatccagagatgtttgagaaattt
ggcatgtcgccttctaaaggcgttctcttttatggaccgcctggctgtgggaaaaccctt
ctcgccaaggcaattgccagcgaatgtcaggccaacttcatcagtatcaaaggacccgag
ttgctaacaatgtggtttggagaaagtgaggccaatgtgcgcgagatatttgacaaggct
cgccaatctgctccttgtgttctcttctttgatgagctagactcgattgcaactcagcgt
ggaaattctgtgggagatgccggtggtgctggagacagagtcttgaaccaacttctaact
gaaatggatggaatgaatgcaaagaaaaccgtctttatcattggggcaacaaacaggcca
gatattattgacccggcattgctcaggcctggacgtcttgaccaacttatctacatccca
ctcccagatgaggcttcgcgccttcagatttttaaagcatgtttgcgcaagtcccccatc
tctaaggatattgacctagcagctcttgcccgttatacgcacggttttagtggtgcagat
atcactgagatatgtcaacgtgcctgcaaatatgccatcagagaagacattgagaaggat
attgagagggaaagaagaaagaatgctaaccccgaagccatggaagaagatgaaattgat
gaggtagccgagatcaagccagcacactttgaggaatcgatgaaatatgcccgaagaagt
gtgagtgatgcggacatcaagaagtaccagctatttgctcagactttgcagcaatctcgt
gggtttggatccgaatttcgatttcctgctcaacagacagagaacaatgcaggagaagct
gctctatccccattttcttcagccgcggttgctggagaggaagctgatctctatgattga

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