KEGG   Malus domestica (apple): 103455429
Entry
103455429         CDS       T03194                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
  KO
K07466  replication factor A1
Organism
mdm  Malus domestica (apple)
Pathway
mdm03030  DNA replication
mdm03420  Nucleotide excision repair
mdm03430  Mismatch repair
mdm03440  Homologous recombination
mdm03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103455429
   03420 Nucleotide excision repair
    103455429
   03430 Mismatch repair
    103455429
   03440 Homologous recombination
    103455429
   03460 Fanconi anemia pathway
    103455429
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mdm03000]
    103455429
   03032 DNA replication proteins [BR:mdm03032]
    103455429
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103455429
Transcription factors [BR:mdm03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    103455429
DNA replication proteins [BR:mdm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    103455429
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     103455429
   MMR (mismatch excision repair)
     103455429
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     103455429
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF223
Other DBs
NCBI-GeneID: 103455429
NCBI-ProteinID: XP_008393233
LinkDB
Position
14:join(28879942..28880072,28880297..28880443,28880532..28880687,28880783..28880960,28881075..28881345,28881426..28881528,28881616..28881740,28881850..28881928,28882025..28882169,28882292..28882452,28882547..28882667,28882775..28882972)
AA seq 604 aa
MAKLMPTPDAISTVLANKSPDESVELPEIVVQVSDLTPRGKSYMFIATDGNAKLKGMLSS
RLGPQVTSGEIQNLGLIRVLGYSVNFNSNLSENYLLVTKCDVVSAALEAEVKNEVKKEDV
GIILKPKQEMVSKSAAQIVNEQAGNMAPSARMAMTRRVHPLVSLNPYQGNWTIKVRVTNK
GTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAAKKFFEKFELGKVYYISKGSLRVA
NKQFKTVQNDYEMTLNEYSEVEEASNEAAFVPETKFNFVPVDMLGPHVNGKELVDVIGVV
QNVSPTMSIRRKIDNESIPKRDITIADDTKKTVVVALWGELATSVGQQLLDIADQSPIVA
IKSLKVGDFQGVSLSTLSKSTILVNPESPEAKKLRSWYDSEGKGASLASVGSGMSPSAKS
GGRSMYSDKVTLSHISEDPSLGEDKPVFFSVKAFISSIRPDQAMWYRACKTCNKKVTEAI
GSGYWCEGCQKNDEECSLRYISVARVTDVSGETYLSLFNDEAERVIGCSADELDKLKSQD
GDENEFQQKLKEATWVPHLFRVSVTLNEYNNEKRKRITARAVAPVDFAAESRFLLEEISK
MKAS
NT seq 1815 nt   +upstreamnt  +downstreamnt
atggcgaagttaatgccgaccccagatgcgatttcgaccgtcttggcgaacaagtcgccg
gacgagtcggttgagctgccggagatagtggtccaggtctccgatctcacccctagggga
aaatcttacatgtttattgctactgatggaaatgcgaagctaaaggggatgctttcctcg
cggctgggtccccaggtcacatctggggagattcagaatctgggtctcattcgcgttctc
ggttattctgttaatttcaattcaaacttatccgaaaattatctgcttgtaacaaaatgt
gatgtggtttcggctgcacttgaggcggaggtgaaaaatgaggtgaaaaaggaagatgtt
gggattattttgaagcccaagcaagaaatggtttcgaaatctgctgctcaaattgtgaat
gagcaggctgggaatatggctccgtctgcgagaatggctatgacacgaagggttcacccg
cttgtttccttgaacccttaccaaggaaattggaccataaaggttcgtgttacaaacaag
ggtacgatgcgtacatacaagaatgctagaggtgaaggttgcgtcttcaatgtggagtta
acagatgaagatggaacacaaattcaagcaacaatgtttaatgaagctgcaaagaagttc
tttgaaaagtttgagttaggaaaggtttattacatttcaaaggggtctctgcgggttgct
aacaagcagtttaagacagtgcaaaatgattatgaaatgacattaaatgagtattctgag
gtggaagaagctagcaatgaagcggcctttgttcccgaaacaaaattcaattttgttcca
gttgatatgttgggtccccatgttaatggaaaggagcttgtggatgttattggagttgtt
caaaatgtgtctcctacaatgagcattagaaggaagatcgacaatgagagtattccaaag
cgtgatatcaccattgctgatgatacgaagaagacagttgtggttgctttgtggggtgag
cttgcaactagtgtaggccagcaattgcttgacatcgctgatcaatctcccatagtcgct
atcaagtccctcaaagttggagacttccaaggtgtatcattgtcaacactgagcaagagc
acaatattggtaaatccagaatcacctgaggcaaagaagttgcggtcctggtatgattct
gaaggtaaaggtgcttcattggcctctgttggctctggtatgagtccatcagccaagagt
ggaggaaggtccatgtactctgacaaagtcaccctgtctcatatatctgaggacccgtcc
ttgggtgaggataagcctgtgtttttcagtgttaaagcgttcataagttcaatcaggcct
gatcaggcaatgtggtaccgcgcttgcaaaacttgcaacaagaaggtgactgaagctatt
ggttctggatactggtgtgaagggtgccagaaaaatgatgaagaatgcagtttaaggtat
atatcagttgcaagagttactgatgtaagtggggaaacatatctttctctattcaacgac
gaagctgagagggtcatcgggtgctctgcagatgaactggacaaattgaaatcacaggac
ggagacgagaatgaattccaacaaaaactgaaagaagcaacttgggttcctcatcttttt
agggtcagtgttactctgaatgagtacaataacgagaagcggaagaggataactgccagg
gcagtcgctccggttgattttgctgctgaatcgaggtttttgcttgaagagatatcgaag
atgaaggcctcataa

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