Malus domestica (apple): 103455672
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Entry
103455672 CDS
T03194
Name
(RefSeq) uncharacterized protein
KO
K26109
nuclear exosome regulator NRDE2
Organism
mdm
Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103455672
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103455672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
103455672
NCBI-ProteinID:
XP_008393476
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All DBs
Position
14:join(31193009..31193526,31193832..31194606,31194771..31195386,31195598..31195769,31196023..31196383,31196771..31196881,31197401..31197752,31198218..31198443,31198545..31198766,31198837..31198990)
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AA seq
1168 aa
AA seq
DB search
MEDDGQPSDGEAAASAAEKTSLFPVVPASQQITSVPPWLSNTSFTTQLSAINDAVAAHFK
PEPPPSPPAPQEHEQGDVRSQAQPYEMLESSSGSDRSDERERTKKKKKKKKSKRRKRRRR
ESSVERGSGAFADYGSRKSGVRVWADSETKPSKDYYLDSHGDRDNLAFGSLYRMDIARYK
PYGLAELSGSDFRGLSWWNKTGSTLDRDADVEALGGKLKSAGRYWSAKYMALERHKNLKR
ARILVPRDLDITVSGDFIPLTDAQTSDDECVDGDDPLSRTSVVEESWEDEVLRKTREFNK
LTREHPHDEKVWLDFAEFQDRVADMQPQKGARLQILEKKISILEKAAELNPDNEELLFPL
LKAYQRRDNSDVLISRWEKILIQHSGSYKLWREFLRVIQGEFSRFKVSEMRKMYAHAIQA
LASACRKHIRQVCQAENHPPDAATVQLELGLVDIFLSFCRFEWQAGYQELATALFQAEIE
FSLFCPSLLLTEQSKQILFEHFWNSDGARVGEEGALGWSTWLEKEEENRQRVIREETAHD
DEGGWTGWSEPLAKNKENSIETEKESESNVVVEEFQEELEDEDVKQEEDTEALLKMLGID
VDVGASGEIKDSSTWIKWSEEELSRDCVQWMPVRTRAAVSHNVGTPDGEADEHLSRVIMY
EDVNEYLFSLSSSEARLSLVLQFVDFFGGKSSQWISTNSSTWAEKVLSLEALPDSILQTL
RKVHDFLIKTQGSSSNFSLESLLGTTNDIYGRTDMMKFLRNATLLCLSAFPRHFVLEDAA
LVAEELSAMNLNPSSRSVTPCRALAKFLLKSDRQDVLLCGVYARREAFHGNIDHARRVFD
MALSSIEGLPLELQSNASLLYFWYAETELANEHGNGCESSLRAMHILFCLGSGSTYSPYK
SHPSNLQLMRARQGFKEKIRTVQMALMRGVIDDQSVALICSAALFEELTSGWAAGIEVLD
QAFALVLPERKSRSYQLEFMFSFYMKMLWRHHGQSSLSKCWESILQGLQIYPCSPELFSD
FIKVGHLYTTPNKLRWVFDDLCHKKPSVVVWLFALSFELSKGGSEHRIRGLFERALANDR
FHNSVVLWRCYIAYEMNMASNPSAARRNFFRAIHACPWSKKLWLDGFVKLNSILSAKELS
DLQEVMRDKELNLRTDIYEILLQDEFVS
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacggacaaccgtcggatggagaagcagcagcatccgcagcggaaaaaacg
tcactcttccccgtcgtacccgcctctcagcaaatcacaagcgtcccgccgtggctttct
aataccagcttcaccacccaactctccgccataaacgacgccgtcgccgcacacttcaaa
cccgagcctccgccgtcaccgcccgcgccgcaagaacatgaacagggggatgtgcggtcg
caagcgcagccgtacgagatgctggagtcttcttctggatccgataggagcgacgagaga
gagaggacgaagaagaagaagaagaagaagaagagtaagaggaggaagaggaggaggaga
gagagctccgtcgagagaggaagcggagcgttcgccgattatgggtcaaggaagtccggt
gttcgggtttgggccgactccgagactaaaccttccaaagattattacctcgattctcat
ggggaccgtgacaatttggcctttggaagtttgtacagaatggacattgctcgctacaaa
ccttatggtcttgctgagctatccgggtctgattttcgaggtttgtcctggtggaacaag
acaggttcgacattggatagagatgctgatgttgaagctttgggtgggaaactaaaatct
gctggtcgatattggtctgcaaagtacatggctttggaacggcataagaacctaaagcgt
gctcgtatacttgtccccagagaccttgacattacagtttccggagattttattccttta
acagatgctcaaacatctgatgacgaatgtgttgatggtgatgatccactctcaagaact
tcagtggttgaagagtcttgggaagatgaagtgctgcgcaaaacacgtgagtttaacaaa
ctgacaagggagcacccccatgacgaaaaggtttggttagattttgcagagttccaagac
agggttgctgatatgcaaccccagaaaggtgctcgcttgcagattctggaaaaaaagatt
agcatactggagaaggcggcagagcttaacccagataatgaggaactgttgtttcctctt
ctaaaggcttatcaaaggagggacaactctgatgtattaattagtagatgggaaaagata
cttatacagcattcaggaagttacaagttgtggagagaatttttgcgcgtcattcaaggg
gagttctccaggttcaaggtttcagaaatgagaaaaatgtacgcacatgcaatccaggct
ctagcttctgcttgcagaaagcacattaggcaggtttgccaagcagaaaaccatcctcca
gatgctgctacagttcaactagaacttggtctggttgatatatttctcagtttttgtagg
tttgaatggcaggctggctatcaagagttggccactgccctatttcaggctgaaattgaa
ttcagtttgttttgtccttctttactcctcaccgaacagagtaaacagatactgttcgag
cacttttggaacagtgatggtgcaagagttggagaagaaggtgctcttggttggtctaca
tggttggagaaagaggaagagaataggcaaagggttatcagagaggagactgcacatgat
gatgaaggtggctggacaggttggtcagaaccactcgcaaaaaataaggaaaatagtata
gagacagaaaaggagtccgaaagtaatgtagtggttgaggagtttcaagaagaacttgag
gatgaagatgtcaagcaagaagaagatactgaagctttgctaaagatgctagggattgat
gttgatgttggtgctagtggtgagattaaagacagttcaacctggatcaaatggtcagaa
gaagagttatcaagagattgtgttcaatggatgcctgttcgtacaagagctgctgtctct
cataatgttggtacacctgatggagaagcagatgagcacctttcgagagtcataatgtat
gaagatgtcaatgaatacctgttttctttgagctcatctgaggcccgtttatctctagtg
ttacaattcgttgatttctttggcgggaaaagctctcagtggatatctacaaacagctcc
acttgggccgagaaagtccttagcttggaggcattgccagattctatattacaaactttg
agaaaggttcatgattttttaatcaaaacacaaggcagttcaagtaatttcagcttggaa
tctctcttgggcaccaccaatgacatctacggaagaacagacatgatgaaatttcttcgt
aatgctaccttgctctgtttatctgcttttccacgtcattttgtcctagaagatgctgct
ttagttgctgaagagctatctgctatgaatttgaatccttccagccgttcagttacccca
tgccgagctctggcaaagttcctcttaaagagtgaccgtcaggatgtgttgctatgtgga
gtttatgcaagaagggaggcttttcatgggaatattgatcatgcaagaagggtatttgac
atggcattgtcatctattgaagggcttcctttggaattacagtcaaatgcttctcttcta
tatttctggtatgctgagacggagcttgctaatgagcatggcaatgggtgtgaatcatca
ctacgtgcaatgcatattttattttgcttaggaagtggttctacgtatagtccatataaa
tctcacccatcaaatttgcaattaatgagagcacgccaaggtttcaaagaaaaaataaga
acggtacaaatggcattgatgcgaggtgttatagatgatcaatctgttgctctcatatgt
tctgctgctttatttgaagagttaacctctggatgggctgcgggtattgaagttctagat
caggcttttgcattggtgcttccagagagaaagagccgtagttatcaacttgaatttatg
ttcagcttttatatgaagatgctttggagacatcatggtcaatcaagtctatcaaaatgc
tgggagtccatattgcaggggcttcaaatatatccatgcagccctgaactttttagtgat
ttcatcaaagttggccatctttatacgacacctaataaactgcggtgggtgtttgacgac
ctctgtcacaagaaaccttctgtggtcgtctggctttttgcattgtcatttgaattgagt
aaagggggatccgagcataggatccgtggattatttgagagggcattggcaaatgatagg
tttcataactcagttgttctttggcgatgctacattgcatatgagatgaacatggcaagc
aatccttcagcggcgaggagaaacttcttccgagcaatccatgcctgcccatggtcaaaa
aagctatggcttgatggttttgtgaaattgaattccatcttatctgcaaaagagctgtcg
gatctccaagaagtcatgcgggacaaggaactgaatctgaggacggacatttacgaaatt
cttttgcaagatgagtttgtatcgtaa
DBGET
integrated database retrieval system
