KEGG   Malus domestica (apple): 103455895
Entry
103455895         CDS       T03194                                 
Name
(RefSeq) WD repeat-containing protein ATCSA-1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
mdm  Malus domestica (apple)
Pathway
mdm03420  Nucleotide excision repair
mdm04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    103455895
  09124 Replication and repair
   03420 Nucleotide excision repair
    103455895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mdm04121]
    103455895
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103455895
Ubiquitin system [BR:mdm04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     103455895
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      103455895
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_EIPR1 NBCH_WD40 WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_SPT8 Beta-prop_Nup120_160 Beta-prop_WDR75_1st WD_LRWD1 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 103455895
NCBI-ProteinID: XP_008393731
LinkDB
Position
15:join(4721858..4722428,4722770..4722948,4723224..4723467,4723997..4724151,4724260..4724349,4724540..4724608,4724690..4724731)
AA seq 449 aa
MWRQIGDREAGKLRPNSFSNRIKSTRIQTLQLSNHKDFISPHRGSVNTLQLDLTEARYLL
SGASDASAAVFDVQRGTDYGGGGAITRHKCLFVVDKQHEHGHKYAVSSAVWYPVDTGLFV
TGSYDHHINVWDTNTTQVVMDFKMPGKVYRTAMSPLATSHMLIAAGTEDVQVRLCDIASG
AFAHTLSGHRDGVMTVEWSTSSEWVLLTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP
PILERSATIKGSTVKPSSSSQSTSAKARAPQRKLSNGSGAKHSPIGKSPAKGSMKQRLHP
GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDVESGCNTLVNFETVRMQTS
RPIQLATSQNSELVFVPCMTAVKAFNMWSGKTSLKFRGHYEHVNCCWFSSQDQELYTGGN
DRQILVWSPPRLVSDEDEGPSKDEDNWSD
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgtggcggcaaatcggagacagagaagcgggcaagctccgcccaaattcgttctcgaat
cgaatcaagtccacccggatccaaacgctccaactctccaatcacaaagacttcatctcc
cctcatcgcggctccgtcaacactcttcagctggatttgacggaggcccggtacctgtta
tccggcgcctccgatgcttccgctgccgtgttcgatgtccagcgcgggaccgattacgga
ggcggcggagctatcacgaggcacaagtgcttgtttgtggtggataagcagcacgagcac
gggcataagtatgcggtgtcctccgccgtgtggtatccggtcgacaccggactgtttgtg
acgggttcgtacgatcatcacatcaatgtttgggatacgaatacgacgcaggtagtgatg
gacttcaagatgccggggaaggtgtaccggactgcaatgtccccgctggcaacttctcac
atgctcattgctgccggtaccgaagatgttcaagttcgcctctgtgatattgcttctggg
gcttttgctcacaccttgtctggccaccgcgatggtgtgatgactgtggagtggtctact
tctagcgagtgggtattgcttacaggtggatgtgatggtgcaatacgtttttgggacatt
agacgtgccggatgttttcgtgttttggatcaatctcagtctcagcttgggaggcgtcca
cccatcctggaacgctctgccacaattaagggttcaacagttaagccctcgtcatcaagt
caaagcacatctgcaaaagctcgggcaccacaaaggaaactttctaatgggagtggtgca
aagcactcacccattggtaaaagtccagcaaagggatctatgaagcaaagattacatcca
gggatgctgtctagtcaggatcgtgccactgcccattatggtgctgttactggattaaaa
gtcactgaagacggcatgtacctcttgagtgcaggttccgattcaagattgaggttgtgg
gatgtagaatctggctgcaatactttggtgaactttgaaactgtgcgtatgcaaaccagc
aggcccatacagttagctacaagtcagaattcggagcttgtttttgttccctgcatgaca
gctgtgaaggcattcaatatgtggtcgggtaaaacatccctgaaatttcgcggtcactat
gaacatgtaaactgttgctggtttagttcacaggatcaggaattgtacactggtggcaat
gatagacaaattctagtttggtcgccgcccagattggtttctgatgaggatgaaggaccc
tctaaggacgaggataattggagcgactag

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