KEGG   Malus domestica (apple): 103456194
Entry
103456194         CDS       T03194                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03013  Nucleocytoplasmic transport
mdm03015  mRNA surveillance pathway
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103456194
  09122 Translation
   03013 Nucleocytoplasmic transport
    103456194
   03015 mRNA surveillance pathway
    103456194
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103456194
   03041 Spliceosome [BR:mdm03041]
    103456194
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103456194
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     103456194
Spliceosome [BR:mdm03041]
 Complex C
  Other components
   EJC/TREX
    103456194
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    103456194
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1 Helicase_C_2
Other DBs
NCBI-GeneID: 103456194
NCBI-ProteinID: XP_070670974
LinkDB
Position
15:complement(join(9104567..9104577,9105177..9105240,9105326..9105409,9105950..9106094,9106686..9106870,9106991..9107047,9107727..9107845,9107946..9108177,9108275..9108447,9108850..9108950,9109179..9109288))
AA seq 426 aa
MGETRDDVYDEELVDYEEEEEKAPDSAAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRSI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVSALVLC
HTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKLHKDLLKNECPHIVVGTPGRILALA
RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKDIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLSECNFPSICIHSGMSQEERLKRYKGFKEGQNRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNDVQERFEVDIKELPEQIDT
ATYMPS
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgggcgaaacaagggacgacgtctacgacgaggagcttgttgattacgaagaagaggag
gagaaggcccctgactctgcagctaaagtcaacggcgaagcccccaaaaagggatatgtt
ggaattcacagttcagggttcagagatttccttttgaagcctgagcttcttcggtctatt
gtcgactctggatttgagcatccttctgaagtgcaacatgaatgtatccctcaagctatc
ctcggaatggatgttatttgtcaagctaaatctgggatgggaaaaactgctgtttttgtt
ctatcatctttacagcagatcgaccctgtcgcaggccaagtctctgcccttgtcctttgc
catactagagaattagcataccagatttgtcatgaatttgagaggttcagtacatacttg
cctgatctcaaggttgctgtcttctatggtggtgttaatatcaaacttcacaaagattta
ctgaaaaatgaatgcccgcacattgttgttggaactcctggaagaatactagcactggca
agagataaagacctctccttgaagaatgtgaggcattttatccttgatgaatgtgacaag
atgcttgaatcactcgacatgaggagagatgtgcaggagatcttcaagatgacgcctcac
gataagcaagtgatgatgttttccgcaacactcagcaaagacatccgcccagtttgcaag
aaatttatgcaagatcctatggaaatatatgttgatgatgaagccaagttgaccttgcat
ggtctagtgcagcactacatcaagttaactgaggcagagaagaaccgcaagttgaatgac
ctccttgatgcattggacttcaatcaagttgttatattcgtcaaaagcgttagcagagct
gctgagctgaacaaactactttcagagtgtaactttccctctatatgcatccattctgga
atgagccaagaagaaaggttgaagcggtacaaaggattcaaggagggtcagaacaggatt
ctcgtggcaactgatttagtcggtagaggaattgacattgagcgtgttaacattgttatc
aactacgacatgccagattctgctgacacttatttacacagggttggcagagctggtagg
tttggcaccaaaggtcttgcaattacgtttgtttcatccgcagcagactctgatgttcta
aatgatgttcaggagaggtttgaggttgatataaaggagcttcctgaacagatcgatact
gccacatacatgccatcttaa

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