Malus domestica (apple): 103456331
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Entry
103456331 CDS
T03194
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm00040
Pentose and glucuronate interconversions
mdm01100
Metabolic pathways
Module
mdm_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103456331
Enzymes [BR:
mdm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
103456331
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
103456331
NCBI-ProteinID:
XP_008394260
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All DBs
Position
15:complement(join(10606272..10606490,10606703..10606931,10607499..10607788,10607895..10608374))
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AA seq
405 aa
AA seq
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MAYTSSFCGNIHNYYVAAVMLFFTISILFLQSSNAAAVSYNVMKFGARADGKTDSTQAFV
KAWASACSSGQGNAVMYIPKGRFLLKAVVFRGPCKTRQVTVRIDGTLVAPTDYRALGNSG
YWILFIEVTGLRVLGGSLDARGVAFWACRKSGKSCPVGARSITFNWANNVLVSGLTSINS
QATHLVVNSCNNVVVRNVKIIAPSESPNTDGIHVQSSTGVTITGSILQTGDDCISIGPGT
RNLYMSNIKCGPGHGVSIGSLGKDLKEDGVQNVTLTNAVFSGSDNGVRIKSWARPSTGFV
KNILFQNIIMRNVKNPVIIDQDYCPNNQGCPSMSSGVKISQVTYRNIQGTSGTAEAVTFE
CSPSTPCTGIRLQDIKLTYLNKATTSSCKNISGTSTGLLMPDSCI
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggcttatacatcaagcttctgtggcaacattcataattattatgtagcagcagtaatg
ctgtttttcacgatcagcatattgttcttgcagtcttccaatgcagcggcagttagctac
aatgtgatgaagtttggtgcacgagcagatgggaagacggactcgacccaagcattcgtc
aaggcatgggcatcggcgtgcagctccgggcagggcaatgctgtcatgtacatccccaaa
ggaaggttcttgttgaaggctgtggtgtttagaggtccatgcaagaccagacaagtaaca
gttcgaatagacggaacccttgtggcccccacggactatagggctttgggaaactcaggc
tactggattttattcattgaggtcaccggacttagggtcctcggtggttccctcgacgcc
aggggggttgcattttgggcttgcaggaaatccggcaagagttgccctgttggagctagg
tctataacgttcaattgggcaaacaacgttctggtaagtggtttaacatcgatcaacagt
caggcaacccaccttgtagtcaacagctgcaacaatgtggtcgttcgaaacgtgaagatc
atcgctccgagtgaaagcccaaacacagatggcattcatgtgcagagctctaccggagtc
accatcacgggcagcatcttgcaaaccggagacgattgcatatcaatcggtcctggcacc
agaaacctctatatgagcaacatcaagtgtggtccaggccatggcgtaagcattggaagt
ctaggcaaggatctcaaggaagatggtgtccaaaatgtaaccctaacgaatgcagtgttc
agtggatcagacaatggagtacgaataaagtcatgggccaggcctagcactggcttcgtt
aagaacattctcttccaaaacatcatcatgaggaacgttaaaaaccccgtcatcattgac
caggattattgccccaataaccaaggctgtccttctatgagttcgggtgtgaagattagt
caagtgacatacagaaacatacaagggacgtcgggaacggcagaggcagtaacatttgaa
tgcagccctagcactccatgtacagggattagattgcaagacatcaagcttacatatctg
aataaggctaccacgtcatcgtgcaagaacattagtggaaccagcactggactgcttatg
ccagattcttgtatatag
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