Malus domestica (apple): 114822215
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Entry
114822215 CDS
T03194
Name
(RefSeq) probable small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114822215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
114822215
03041 Spliceosome [BR:
mdm03041
]
114822215
03032 DNA replication proteins [BR:
mdm03032
]
114822215
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
114822215
Spliceosome [BR:
mdm03041
]
Complex A
U1 snRNP components
Sm proteins
114822215
U2 snRNP components
114822215
Complex B
U1 snRNP components
114822215
U4/U6.U5 tri-snRNP components
114822215
Complex C
U2 snRNP components
114822215
DNA replication proteins [BR:
mdm03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
114822215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF6454
Motif
Other DBs
NCBI-GeneID:
114822215
NCBI-ProteinID:
XP_028952347
LinkDB
All DBs
Position
16:complement(join(28899570..28899639,28901733..28901797,28901942..28901979,28902109..28902196,28902619..28902624))
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AA seq
88 aa
AA seq
DB search
MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSTDAYMNLQLANTEEYIDGQSTGNL
GEILIRCNNVLYLRGVPEDEEIEDAERE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggctacaataccagttaacccgaagccgttcctgaataatctgactggtaagactgtc
attgtgaaacttaaatggggaatggagtacaaaggttttcttgtctcgacagatgcctat
atgaacttgcagttggcaaacactgaagaatatattgatggacaatctactggaaacctt
ggagagattttgatcagatgcaataatgttctgtatcttcgtggggtaccagaggatgaa
gaaattgaagatgctgaacgggaatga
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