Malus domestica (apple): 114822589
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Entry
114822589 CDS
T03194
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114822589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
114822589
03009 Ribosome biogenesis [BR:
mdm03009
]
114822589
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114822589
Spliceosome [BR:
mdm03041
]
Complex A
U1 snRNP components
U1 related factors
114822589
Complex B
114822589
Ribosome biogenesis [BR:
mdm03009
]
Eukaryotic type
Pre-60S particles
Helicases
114822589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
114822589
NCBI-ProteinID:
XP_028953109
LinkDB
All DBs
Position
17:join(19554903..19554958,19555321..19555586,19555922..19556101,19556237..19556398,19556609..19556763,19558028..19558120,19558336..19558421,19558518..19558744,19559454..19559687,19559866..19559924)
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AA seq
505 aa
AA seq
DB search
MSRYDSRSGDSTSYRDRRSDSGFGGATGFGGSARSSSSRRDDDGAKSPRKFDLDGLIPFE
KNFYVESSQVEKMSEVEMEEYRKRREITVEGRDVPKPIKSFRDTGFPEYVLEQVTRAGFV
EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAILHVNAQPILSPGDGPIVLVLAP
TRELAVQIQQEATKFGSSSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESH
HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLY
NPYKVIIGSPNLKANHSIHQIVDIITENQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKDGKSPIMTATDVAARGLDVKDVKFVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIALLEEAGQKVSPELAAMGRG
APPPPSGHGVFRDRGRGYGGGRPWN
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgacagccgctccggcgactccacttcctaccgtgaccggagaagcgat
tccggatttggtggggcgaccggcttcggtggctcagcacggtcttcgtcaagcaggagg
gatgatgatggtgctaagtcaccaaggaaatttgatttggatggattgataccttttgag
aagaatttctatgttgagtcctctcaagtggaaaaaatgtcggaggtggagatggaggaa
tatagaaaacggagggaaattactgttgaaggccgtgatgttccaaagcccatcaagagt
ttccgtgacactgggtttccagaatacgttttggaacaagttacaagggctggatttgtg
gaacctacaccaattcaagctcaaggatggccaatggctttgaagggtcgcgatctcatt
ggtattgctgaaacaggatcagggaagacactagcctacctgttgcctgcaattctccat
gtcaatgcccagccaattctgtctcctggagatggcccgatagtactagttttagctcca
acccgtgaacttgctgttcaaatccaacaagaggccactaaatttggttcatcatcaaaa
attaaaagcacatgcatatatggcggggttccaaagggtcctcaagttcgtgatctgcag
aaaggagttgagattgtaattgctacacccgggaggttgattgatatgatagagtcgcat
cataccaacttgcgaagggtcacgtaccttgtgctggatgaggccgatcggatgctagac
atggggtttgaacctcagataaggaaaatcgtttctcagattcgcccagaccgtcaaaca
ttatactggagtgctacctggccaaaggaggttgaacaactggctaggcagttcctttac
aatccatacaaagtgataataggttctccaaatttgaaagctaaccattcgatccaccaa
attgttgacatcattactgaaaatcagaaatataacaaattggtaaagttgctagaggat
attatggatggcagcagaatactgatattcatggatactaagaaaggatgtgatcagatc
actcggcagctccgcatggatggatggcctgctctttcgattcatggtgacaaaagtcaa
gcagaaagagattgggtcctctccgagtttaaagatggcaagagccccataatgactgca
actgatgttgctgctcgtggtctagatgttaaggatgtgaaatttgttataaactatgat
tttcctggatccctcgaagattatgttcaccgcattggccgaactggaagagctggggcc
aaaggaacagcatacacgttctttacagctgctaatgctagatttgcaaaggaacttatt
gccttgcttgaggaagctggacagaaggtcagtcctgagttggcagcaatgggtcgtggt
gcaccacctcccccctcaggtcacggggtttttcgagatcgtggtaggggttatggaggc
ggtcgtccttggaactga
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