Malus domestica (apple): 114824362
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Entry
114824362 CDS
T03194
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm00040
Pentose and glucuronate interconversions
mdm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
114824362
Enzymes [BR:
mdm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
114824362
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
114824362
NCBI-ProteinID:
XP_028956888
LinkDB
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Position
04:join(15630741..15630871,15630972..15631438,15632309..15632612,15632764..15633111,15633946..15634156)
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AA seq
486 aa
AA seq
DB search
MIPRTCIVLLFLLTSFYPLASAFVNLTLPGQHPNPDEVVLQVNRMVNASLARRHMLQTTQ
KDQLFSACLTGNPIDDCWKCDPDWPNNRQSLADCAIGFGQYAHGGKGGEYYIVTDSSDDD
AVTPRPGTLRYAVIQTEPLWIVFPGNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITL
QYISNVIIHNVHIHHCHQSGQANVRSSPTHYGFRTESDGDGISIFGSKDIWIDHCSLSHC
KDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMP
RCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPSDRNAKEVTKRVETAEGKWR
DWNWRSEGDIMVNGAFFVASGEGMELKYEKAYSVEPKSAVLIDQLIMHAGALGVGGRDNN
LGKWSSDGDGNGLGSGPDYTDDMSGSSSILLPPLPSTCTVFSFFISLSFLLVLYVITYPR
RHAFII
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgatcccccgaacctgcattgtccttctctttcttctcacctcattttatcctcttgcc
tcagcattcgtcaacctcactctccctggtcagcatcccaacccagatgaagttgttcta
caagttaataggatggttaatgcttcattagcaagaaggcatatgctgcaaacaacccag
aaagaccagctgttttctgcatgcttaactggtaacccgatagacgactgctggaaatgt
gatccagattggccaaacaacaggcaaagcctggcagattgtgcaatagggtttggccaa
tatgctcatggaggcaaaggtggtgagtattacattgtgacggactcttcggatgacgat
gccgtgactccgaggccaggcactctcagatacgctgtgattcagactgagccactctgg
attgtgttccctggcaacatgctcatcaagctctcccaagaactcatattcaacagctac
aaaaccctcgatggccgcggagccaatgtccacattgtgggtggtggatgcatcactctg
cagtacataagcaatgtcatcatccacaatgtgcatatccaccattgtcatcagtcaggt
caggctaatgtgcgttcaagccctactcactatggctttcgcacagaatcagacggtgat
gggatctccatctttggatccaaagacatatggatagaccattgtagcctatcacactgc
aaggatggactgatagatgcagtgatggggtccacaggaataacaatatcaaacaattat
ttttctcatcacaatgaagtcatgctgctgggccacagcgatgactacttgcctgactcc
ggcatgcaagtcaccatagccttcaatcactttggagaaaagttggtgcagagaatgcct
aggtgtagaaggggttacatccacgtggtcaacaatgacttcactcaatgggaaatgtac
gccatcggaggcagtggaaaccctacaattaacagccagggaaatcgctacactgctcca
tcagaccgtaatgccaaggaggtgacaaagcgtgtggagacggcggaagggaagtggagg
gactggaactggagatcggagggggacataatggtaaatggagcattttttgtggcatct
ggagagggaatggagcttaagtatgagaaggcctacagtgtggaacccaagtctgctgtg
cttattgaccaactcatcatgcatgctggtgcccttggtgttggtggcagggacaacaac
ctggggaagtggagctcggacggcgacggaaatggtttaggctctggtccagactatacg
gatgacatgtcgggaagcagcagcattctactgccgccacttccatccacctgcactgtc
ttctcctttttcatctcattgtcattcttgctagttttgtatgttataacttatcccaga
cgacatgcatttataatatga
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