KEGG   Malus domestica (apple): 114825927
Entry
114825927         CDS       T03194                                 
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1A-like
  KO
K10601  E3 ubiquitin-protein ligase synoviolin [EC:2.3.2.27]
Organism
mdm  Malus domestica (apple)
Pathway
mdm04120  Ubiquitin mediated proteolysis
mdm04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    114825927
   04120 Ubiquitin mediated proteolysis
    114825927
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mdm04121]
    114825927
Enzymes [BR:mdm01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     114825927
Ubiquitin system [BR:mdm04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    114825927
SSDB
Motif
Pfam: zf-RING_2 zf-rbx1 zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 zf-C3HC4_3 zf-RING_16 zf-RING_11 zf-ANAPC11 zf-RING_5 FlxA zf_RING_Vps8 zf-RING_Vps41 zf-HC5HC2H Prok-RING_4 zf-C3HC4_4
Other DBs
NCBI-GeneID: 114825927
NCBI-ProteinID: XP_028960815
LinkDB
Position
07:complement(join(36597364..36597495,36597585..36597852,36598041..36598176,36598491..36598629,36618986..36619052,36619138..36619287,36619570..36619763))
AA seq 361 aa
MILYLRYMILATTTVSTFVKYVFYVTDMLMEGQWEKKPVYTFYLELIRDLLHLSLYLCFF
LVIFTYYGVPLHLIRELYETFRNFKIRIADYIRYRKLTSNMNDRFPDATPEELNASDATC
IICREEMTTAKKLLCGHLFHVACLRSWLERQHTCPTCRALVVPPDSGTGTAGHRGSQSDV
HQQGTGTTAQGGGVAGDNVSQHEARLRAAAAASIYEKSYVYPSANRLVWSPGYTVIPQVQ
RHTADSSNTESGGESSIGQSQPQLAAQGGAANLSFSQFPPYMFVPGANLAYGERLGSDPN
LTASPLEAQKKLLQHRIEILQNQLQVLQKPKPKESEDMGPTMAWQRKEYRSFFICFGLWT
S
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgattttgtatctcaggtacatgatactagcaacaacaacagtgtcaacatttgtgaaa
tatgttttctatgttactgacatgcttatggagggacaatgggagaagaagcctgtctac
acgttctacttggaacttattcgggacttgcttcacttgtctctgtatttgtgcttcttc
ctcgtgattttcacgtactatggtgtgccattgcacttgatacgtgagctctatgaaaca
tttaggaactttaagattcgcattgctgattatattcgttatcgaaagctcacatcaaac
atgaatgatcgattcccagatgctacgcctgaagaacttaatgcaagtgatgcaacttgt
atcatttgccgtgaagagatgacaacagccaagaaactattatgtggacacctttttcat
gtcgcttgcctacgatcatggttagagcgacagcatacctgccctacttgcagagcccta
gttgtacctcctgacagtgggacaggtacagctggacataggggttcacagtcagatgtt
catcaacaggggacaggcacaacggctcagggtggtggagttgcgggtgataatgtgagc
caacatgaagccaggctccgagctgctgctgctgcatcaatatatgagaagtcttatgta
tatccttctgcaaacagactagtatggtctcctggatatacggtgattcctcaggttcaa
agacatacggctgactcctctaatactgaatctggtggagaatcttctattggacaatca
cagccacaacttgcagcccaaggtggagctgcaaacttgtccttctctcagtttccacct
tacatgtttgtccccggagccaacttggcctatggggagaggttgggcagcgatccaaat
ctgacagcttctccgctggaggcccagaaaaagcttcttcagcaccggattgagatcctg
cagaatcagctccaagttttacagaaaccaaaaccaaaggaaagtgaggacatgggccca
acaatggcatggcaaaggaaagagtatcgcagcttcttcatctgtttcggactgtggacg
tcatga

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