Malus domestica (apple): 139192190
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Entry
139192190 CDS
T03194
Name
(RefSeq) N-glycosylase/DNA lyase OGG1 isoform X1
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
139192190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdm03400
]
139192190
Enzymes [BR:
mdm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
139192190
DNA repair and recombination proteins [BR:
mdm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
139192190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
RecR_HhH
HHH
HHH_2
HHH_8
Motif
Other DBs
NCBI-GeneID:
139192190
NCBI-ProteinID:
XP_070669861
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All DBs
Position
15:join(41253499..41254280,41254796..41255006,41255171..41255425)
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AA seq
415 aa
AA seq
DB search
MKQTSLFTVIPLLSFPLPGSGGNCSADLRKFLFVPTISMLSLHLRSLSTMSKRQRPINSP
PSTPQTPQTHNSKRPKLPLVPTTKWVPLNLTQSELSLPLTFPTGQTFRWRQTGPLQYTGV
VGCHLVSLEHLPNGDVSYCLHSTTSSERGLAEAALLDFLNMGISLAGMWEVFSASDSRFA
ELAGYLGGARVLRQDPVECLVQFLCSSNNNIQRITKMVDFVSSLGNHLGSVGGFEFHEFP
SLERLSMVSEKEFREAGFGYRAKYITGTVKALQLKPGGGAEWLLSLRKMELEEVIEALST
LPGVGPKVAACIALFSLDQHHAIPVDTHVWQIATRYLIPELAGARLTPKLCVRVAEAFVS
KYGKYAGWAQTVLFIAELPSQKALLPAHFTSAKESKATKKKDRESHTVVETPTVE
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaacttccctttttaccgtcatccctctcctctctttccctctccccgggtct
ggagggaattgctctgcagacctcagaaaattcttattcgtacccaccatttccatgctc
tcactgcacctgagatctctctcaaccatgagcaagcgacaaagacccatcaattctcct
ccatcgaccccccaaactccgcaaacccacaactccaaaagacccaaattacccctcgta
cccaccaccaagtgggtcccactcaacctcacccaatcggagctctcccttcccctcacc
ttccctaccggccaaaccttccggtggcggcagactggccctctccagtacaccggcgtc
gtcgggtgccaccttgtctccctcgagcacctcccgaacggcgacgtttcctactgccta
cacagcaccacctcctccgagcgcggcctcgcggaggcggccctgctcgattttctcaat
atgggtatatctctggcgggaatgtgggaggttttctcggcgtcggattcgcggttcgcc
gagctcgctgggtatttgggcggggctagagtgctgcggcaagacccggttgagtgtttg
gttcagtttctttgttcgtcgaataacaacattcagaggattacaaaaatggtggatttt
gtgtcgtcgttggggaaccatttggggtctgttggaggttttgagttccatgaatttcca
tctttggagcgcttgtcgatggtgtcagagaaagagttcagagaagctggctttggctat
agggccaagtacattactggcactgtaaaagctttgcagttaaaacctggtggaggtgca
gagtggcttttgtctctgcgtaaaatggagcttgaggaggtgattgaagctctttcgact
ttgcctggagttggtcccaaggtggcggcatgtatagctctattctcgctcgaccaacac
catgccattcctgttgatacacacgtgtggcagattgctacacgatacctcatacctgag
ctagcaggtgctcgtctgacgcctaagctctgtgtccgtgtggcagaggcatttgtgagt
aaatacgggaaatatgcaggatgggctcaaactgtgctttttattgctgaattaccttca
caaaaggcccttctaccagctcattttacaagtgcaaaagagagtaaagctacaaagaaa
aaggatcgtgaatcgcacactgtagtggaaactccaactgttgagtag
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