Malus domestica (apple): 139192490
Help
Entry
139192490 CDS
T03194
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm00040
Pentose and glucuronate interconversions
mdm01100
Metabolic pathways
Module
mdm_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
139192490
Enzymes [BR:
mdm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
139192490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
139192490
NCBI-ProteinID:
XP_070670754
LinkDB
All DBs
Position
15:complement(join(4494693..4495668,4495776..4496560))
Genome browser
AA seq
586 aa
AA seq
DB search
MSITNTLVCILVFFLASSLFIGIGQGHKILDVTKYGAMGDGRADDSQAFFKAWKDLCEGN
NDATDDIPILIVPEGKTYLLQRIKFEGPCNSKSVHVQILGNLLAPVRGAWKECDSGDWLS
FSNIENLMLDGSGKIDGQGAAWWSTSQYNARSRKLLANNDCKPNKALQFHNCQNLKLSGL
TFLNSPQAHIGINSCDNADVSDLNIHAPEDSPNTDGIDISSSTHVTIRNSFIGTGDDCIA
IGDGCSFLYITNIACGPGHGISVGSLGEDGASNKVDNIYVKDCSFTGTTNGARIKTWQGG
SGYARNITFERIKLDRAKYPIIIDQYYCNGEHNCKSQSSAVVVADVTYNDFEGTSATDEA
IKLNCDKVSGGCHNILMDKINIVPAVGDMKIFASCNNADGTYVGTTVPDVACLKSSTTEP
TTPTTPSSPKTSAPPVQILPLPSPPPIPVMPLPSPSPVPVMPLPSPSPVPVMPLPSPSPV
PIIPPPARPPVSVIPTPSLPSITPPPEDIKPPPVPITPPPQPITPPQSTAPPVPRGLDIT
GGAGEAGELDPSYFPSGAPGSANLPISYYLFCPLMVVLTATTIIFN
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatcaccaacacactcgtttgcattttagttttctttctcgcttcatcgttgttt
attggcatcggacaaggccacaaaatattagacgtaaccaaatacggtgctatgggagat
ggacgggcagacgactcccaagctttttttaaagcgtggaaagatttatgtgaaggaaat
aatgacgctacggatgacataccgatacttattgtgccggaggggaaaacgtacttattg
caacgtataaagtttgaaggtccatgcaactcgaagagcgttcacgttcagattctaggg
aatttattggctcctgtgcgtggtgcatggaaagaatgcgattcgggggactggctaagt
ttttcaaacattgaaaacctaatgctcgacggctcaggaaaaatcgacggccaaggggct
gcgtggtggagcaccagccagtacaatgcgagatcgcgcaaactcttggcaaataacgac
tgcaaaccaaataaggcattgcagttccacaactgtcaaaaccttaagctcagcggactg
acttttctgaacagcccgcaagcgcatattggtataaatagttgtgacaatgcagatgtc
tcagatttgaacatacatgcgccggaagacagtccaaacactgatggtattgacatctct
tcctcgacccatgtcaccattcgcaactcgtttatcggaacaggcgatgattgtatcgcc
attggcgacgggtgttcctttctctacatcaccaacattgcgtgcggaccaggccatgga
attagcgttggaagcttaggagaagatggagctagtaataaagtggacaacatatacgtg
aaagattgtagttttactggaactacaaacggagcgagaataaaaacgtggcagggcggc
tccgggtatgcgaggaacatcacgtttgagaggatcaaacttgacagagccaaataccct
atcattattgatcagtactattgcaatggggaacacaattgcaaaagtcagtcgtcggcc
gtggtggtggcggatgtgacgtacaacgattttgaaggcacttctgcgacggatgaggcg
attaaactcaactgtgataaagtttctggtggctgtcataatattttgatggataaaatt
aatatagtgccagcggtcggggatatgaagatttttgcatcttgtaacaatgccgacgga
acttatgtcggcactacggtgcccgacgtggcttgtctaaagagttcaacaacggagcct
acgaccccaacaacaccatcttcaccaaaaactagcgctccgccggtacaaatcctacca
ttgccatcgccaccacctataccggtaatgccgctgccgtcgccgtcacctgtaccggta
atgccattgccgtcgccgtcacctgtaccggtaatgccactgccatcgccgtcacctgta
ccaatcattcctccgccagcgcgaccaccggtatcagtcataccaacgccatcgctgcca
tcaatcaccccaccaccagaagatatcaagccaccgccagtgccgatcacaccaccaccg
caaccaatcacgccaccacagtcaactgcaccacctgtgccacggggactagacatcaca
gggggggcaggggaggcaggcgagctagatccttcgtacttcccaagtggagctcctggc
agtgctaatctacctataagctactacctattttgcccactgatggtggtccttactgca
acaactataatttttaattaa
DBGET
integrated database retrieval system
