Malus domestica (apple): 139193399
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Entry
139193399 CDS
T03194
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139193399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
139193399
03009 Ribosome biogenesis [BR:
mdm03009
]
139193399
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139193399
Spliceosome [BR:
mdm03041
]
Complex A
U1 snRNP components
U1 related factors
139193399
Complex B
139193399
Ribosome biogenesis [BR:
mdm03009
]
Eukaryotic type
Pre-60S particles
Helicases
139193399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
139193399
NCBI-ProteinID:
XP_070672497
LinkDB
All DBs
Position
17:complement(join(17270958..17271222,17271571..17271663,17271803..17271944,17272903..17272959,17273049..17273195,17273748..17273807,17277150..17277345))
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AA seq
319 aa
AA seq
DB search
MAQKPRRSPEFVVGEGMHAHAEDNRAEIESKSSKLSDLQGGGGRKKEGLFVGGVKGEGGG
AFCGWASLAEWYLRIPYRLHPRDHNARGGDGPIVLILAPTTQHAEQIQQEGAKFVAAYNI
KVLSGLYLLKHENSGIGYDNMQFCVGDDFKGISLTGSFHTLNSSQFASQNQKSRIKNRFA
SLPVKSRIKLSLPICQSSQVKFAQTVKNHSGVLAGQKSLINGQNYSFTTHAKLVELLGGI
LDDSRIVIFMDTKKGCESHDQIALQLCTDGQHAVLVHENESQAERVRIVSEFQAGKIPIM
IATDVAARVLGINRISLSL
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaaagccacggaggtcgccggagttcgtcgtcggggaaggtatgcatgcacat
gcagaggataatcgggctgagatcgagagtaagagctcgaagctctcggatcttcagggg
ggagggggaaggaaaaaagaagggctttttgtgggtggggtaaagggtgaaggagggggt
gctttttgtgggtgggcctctttagcagagtggtatcttcgaattccgtatcgcttgcat
ccacgtgatcataatgctcgtggtggagatggcccaatagtattgattttagctccaaca
actcagcacgctgaacaaatccaacaggagggtgctaaatttgttgcagcttacaacatt
aaagtcttatccggcttgtacctgcttaagcatgaaaattctggcattggttatgataac
atgcaattttgtgtaggtgatgattttaaggggatttccttgacgggttctttccatact
ctcaactctagccagtttgccagccagaatcaaaaatcaagaatcaagaaccggtttgcc
agtttgccagtcaagtcaagaatcaagttaagtttgccaatttgccagtcaagtcaagtc
aaattcgctcagactgtcaaaaatcattctggtgtactggctggccaaaagagcttgata
aacgggcaaaactattccttcacaacgcatgcaaagttggtcgagctgctaggtggtata
ttggatgacagcagaatagtgatattcatggatacaaagaagggatgtgaatcacatgat
cagatcgccctgcagctttgcacggacggtcagcatgcagtcttggttcatgaaaacgaa
agtcaagcggaaagggtccggattgtctctgagtttcaagctggcaagatccccataatg
attgcaacagatgtagccgctcgtgttctaggtatcaatagaatttctcttagtttgtga
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