KEGG   Malus domestica (apple): 139194340
Entry
139194340         CDS       T03194                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
mdm  Malus domestica (apple)
Pathway
mdm03013  Nucleocytoplasmic transport
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    139194340
  09122 Translation
   03013 Nucleocytoplasmic transport
    139194340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    139194340
   03041 Spliceosome [BR:mdm03041]
    139194340
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     139194340
Spliceosome [BR:mdm03041]
 Complex C
  Other components
   EJC/TREX
    139194340
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    139194340
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_IFT122_1st WD40 EIF3I WD40_WDHD1_1st Beta-prop_EML_2 WD40_Prp19 Beta-prop_WDR3_1st DUF7099 NBCH_WD40 WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 PgaA_barrel Beta-prop_Vps41 Beta-prop_WDR3_2nd Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 139194340
NCBI-ProteinID: XP_070674750
LinkDB
Position
03:complement(join(3207357..3207394,3207483..3207615,3207818..3207857,3208009..3208095,3208307..3208401,3208474..3208551,3208996..3209064,3209231..3209251))
AA seq 186 aa
MGRTSPLDDELTILDVRKFKPIHKRKFSYEVNEIAWSTTSEIFFLTIGNGENNFLLVEVL
AYPSLKPVDTLMAHTAACYCIAIDLIGRYFAVGSVDSVVSLWDISEMLCVKTFPKLESPV
RDNKLQPHWRSNVQTGRTVHQIPCRAAMNNVEWNPKSNLLAYAGDDKNKYQTDEGVFRIF
GFKSAT
NT seq 561 nt   +upstreamnt  +downstreamnt
atgggacgcacatcgccgttggatgatgaactcacaattttggatgttcggaagtttaag
ccaattcacaaacgaaagttcagttatgaggttaatgaaattgcttggagcacaacaagt
gaaattttcttcttgacgattggaaacggtgagaataactttctgctagttgaagtacta
gcatacccatctcttaaaccagtcgacactctcatggctcatacagctgcctgttattgc
attgctattgacctaattggaagatattttgctgttgggagtgttgattccgtggtcagc
ctgtgggatatctcagagatgctctgtgtgaaaacatttccaaaacttgaatcacctgtg
agggacaataagcttcaaccacactggagatcaaatgttcaaaccgggaggacagtacat
cagattccatgtagggcagccatgaacaacgttgagtggaatcccaaatccaatctactt
gcatatgccggagatgacaagaacaaatatcaaactgatgaaggtgtttttaggatattt
ggcttcaaaagtgcaacctaa

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