Malus domestica (apple): 71430804
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Entry
71430804 CDS
T03194
Symbol
rpoC1, MRV66_pgp074
Name
(RefSeq) RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
71430804 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdm03021
]
71430804 (rpoC1)
03400 DNA repair and recombination proteins [BR:
mdm03400
]
71430804 (rpoC1)
Enzymes [BR:
mdm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
71430804 (rpoC1)
Transcription machinery [BR:
mdm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
71430804 (rpoC1)
DNA repair and recombination proteins [BR:
mdm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
71430804 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
71430804
NCBI-ProteinID:
YP_010304149
UniProt:
A0A7U3HYE9
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All DBs
Position
CP:complement(join(21981..23591,24336..24767))
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AA seq
680 aa
AA seq
DB search
MIDRYKHQQLRIGLVSPHQISAWAKKTLPNGEVVGEVTKPYTFHYKTNKPEKDGLFCERI
FGPIKSGICACGNYRVIGDEKKDPRFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
RLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT
TQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRR
RDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
YRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFA
SNIGVAKSKIREKEPVVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHP
LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY
VLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEPFFCNSYDAIGAYRQKRINLDS
PLWLRWRLDQRVITSRETPIEVHYESLGTYHEIYGHYLIVRSIKKEIICIYVRTTVGHIS
LYREIEEAIQGFCRAYSYGT
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatcggtataaacatcaacaacttcgaattggattagtttctcctcaccaaata
agtgcttgggccaaaaaaaccctacctaatggagaggtagttggagaggtgacaaaaccc
tatacttttcattacaaaaccaataaacccgaaaaagatggattattttgtgaaagaatt
ttcgggcctataaaaagtgggatttgtgcttgtggaaattatcgagtaatcggagatgaa
aaaaaagacccgagattttgtgaacagtgtggagtcgaatttgttgattctcggatacga
agatatcaaatgggctacatcaaactggcatgcccagtaacccatgtgtggtatttgaaa
cgtcttcctagttatatcgcgaatcttttagataaacctcttaaagaattagaaggccta
gtatattgcgatttttcttttgctaggcccatagctaaaaaacctactttcttacgatta
cgaggttcattcgaatatgaaatccaatcctggaaatacagcatcccacttttttttact
acccagggcttcgatacatttcgaaatagagaaatttctactggagcaggtgctatccga
gaacaattagccgatttggatttgcgaattattatagattattcgttggtagaatggaaa
gaattaggggaagaggggcccacgggtaatgaatgggaagatcgaaaagttggaagaaga
agggattttttggttaggcgcatggaattggctaagcattttattcgaacaaatatagaa
ccagaatggatggttttatgtctattaccagttcttcctcccgagttgagaccgatcatt
cagatagatgggggtaaactaatgagctcagatattaatgaactctatagaagagttatt
tatcggaacaatactcttatcgatctcttaacaacaagtagatctacgccaggggaatta
gtaatgtgtcaggagaaattggtacaagaggctgtggatacacttcttgataatggaatc
cgcggacaaccaatgagggacggtcataataaggtttacaagtcgttttcagatgtaatt
gaaggaaaagagggaagatttcgtgaaactctgcttggcaaacgggtcgattattcgggg
cgttctgtgattgtcgtaggtccctcactttcattacatcgatgtggattgcctcgcgaa
atagcaatagagcttttccagacatttgtaattcgtggtttaattagacaacactttgct
tcgaatataggagttgctaagagtaaaattcgggaaaaagagccggttgtatgggaaata
cttcaggaagttatgcaagggcatcccgtattactgaatagggcgcctactctgcataga
ttaggcatacaggcgttccaacccattttagtagaaggacatgctatttgtttacatcca
ttagtttgtaagggattcaatgcagactttgatggtgatcaaatggctgttcatgtacct
ttatcattggaggctcaagcggaggcccgtttacttatgttttctcatatgaatctcttg
tctccagctattggggatcctatttccgtaccaactcaagatatgcttattgggctctat
gtattaacgagtggaaatcgtcgaggtatttgtgcaaataggtataatccatgtaatcgc
agaaattatcaaaataaaagaattgatgataataactataagtatacgaaagaacctttt
ttttgtaattcctatgatgcaattggagcttatcggcagaaaagaatcaatttagatagc
cctttgtggctccggtggcgactagatcaacgcgttattacttcaagagaaactcccatc
gaagttcactatgaatctttgggtacctatcatgagatttatgggcactatctaatagta
agaagtataaaaaaagaaattatttgtatatacgttcgaaccacagttggtcatatttct
ctttatcgagaaatcgaagaagctatccaagggttttgccgagcctactcatatggtacc
taa
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