Monodelphis domestica (gray short-tailed opossum): 100014246
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Entry
100014246 CDS
T01031
Symbol
TARDBP
Name
(RefSeq) TAR DNA binding protein
KO
K23600
TAR DNA-binding protein 43
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03015
mRNA surveillance pathway
mdo05014
Amyotrophic lateral sclerosis
mdo05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100014246 (TARDBP)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100014246 (TARDBP)
05022 Pathways of neurodegeneration - multiple diseases
100014246 (TARDBP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100014246 (TARDBP)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100014246 (TARDBP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
100014246
NCBI-ProteinID:
XP_007491497
UniProt:
A0A5F8GU32
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All DBs
Position
4:complement(366423493..366430776)
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AA seq
414 aa
AA seq
DB search
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQVA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQSQGNMQ
REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatatattcgggtaactgaagatgaaaatgatgagcccatcgagattccatca
gaagatgatggtacagtgttgctgtccacagttactgctcagtttccaggagcatgtggg
ctccgctaccgcaatccagtgtctcagtgtatgagaggtgtacgcctcgtagaaggaatt
ctgcatgctcctgatgctggctggggaaatctggtatatgttgtcaactacccaaaagat
aacaaaaggaaaatggatgaaacagatgcttcatcagcagtcaaagtgaaaagagctgtg
cagaagacctctgatttaatagtcttgggtctaccctggaaaacaacggagcaggatcta
aaagaatatttcagcacttttggagaagtccttatggtgcaggtcaagaaagacattaaa
actggtcattcgaaaggatttggttttgttcgttttacggaatatgaaacgcaggtgaaa
gtaatgtcacagcgccacatgatagatggacggtggtgtgactgtaaacttcctaattcc
aagcaaagcccagatgagcccttgagaagcagaaaggtatttgtcgggcgctgtacagaa
gacatgactgctgatgagttgcggcagtttttttgccagtatggagaagtagtagatgtc
ttcattcccaaaccattcagggcctttgcctttgttacatttgcagatgatcaggttgcc
caatctctttgtggagaggacttgatcattaaaggaatcagcgtacatatatccaatgct
gaacctaagcataatagcaataggcagttagaaagaagtggaagatttggtggtaatcca
ggtggctttggaaatcagggtgggtttggtaacagtagagggggtggagctggtttggga
aacaaccaaggtagtaacatgggtggagggatgaattttggagctttcagcatcaaccct
gctatgatggctgcagcccaggcagcactacagagcagctggggtatgatgggcatgtta
gctagtcaacagaaccagtcaggcccatcaggcaataaccaaagtcaaggcaatatgcag
agggaacccaaccaggcttttggttctggaaataactcgtatagtggctctaactctggt
gcggcaattggttggggttcagcatcaaatgcaggatcaggaagtgggtttaatggaggc
tttggttcaagcatggattccaaatcatcaggttggggaatgtag
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