Mycolicibacterium doricum: MDOR_12780
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Entry
MDOR_12780 CDS
T06662
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mdr
Mycolicibacterium doricum
Pathway
mdr03030
DNA replication
mdr03410
Base excision repair
mdr03420
Nucleotide excision repair
mdr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MDOR_12780 (ligA)
03410 Base excision repair
MDOR_12780 (ligA)
03420 Nucleotide excision repair
MDOR_12780 (ligA)
03430 Mismatch repair
MDOR_12780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdr03032
]
MDOR_12780 (ligA)
03400 DNA repair and recombination proteins [BR:
mdr03400
]
MDOR_12780 (ligA)
Enzymes [BR:
mdr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MDOR_12780 (ligA)
DNA replication proteins [BR:
mdr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MDOR_12780 (ligA)
DNA repair and recombination proteins [BR:
mdr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MDOR_12780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MDOR_12780 (ligA)
MMR (mismatch excision repair)
DNA ligase
MDOR_12780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MDOR_12780 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BBZ07109
UniProt:
A0A1X1TG04
LinkDB
All DBs
Position
1277469..1279583
Genome browser
AA seq
704 aa
AA seq
DB search
MSSKDAEAALAEQAEDALDADLRREWQELADEVREHQFRYYVRDSPIITDAEFDALLRRL
QTLEDQHPELRTPDSPSQLVGGAGFATDFTPAEHLEPMLSLDNVFDPDELAAWAERLKSE
IGADPHYLCELKIDGVALALVYRDGKLTRAATRGDGRTGEDVTLNARTISDIPERLTPSD
EFPVPRVLEVRGEVFFRVADFAELNAGLVAEGKAPFANPRNSAAGSLRQKNPAVTARRKL
HMICHGLGRVTSPAGFGFASLHDAYRALKQWGLPVSEHTTRVQGLDAVTERIAYWGEHRH
DVEYEIDGVVVKVDEFSLQRRLGSTSRAPRWAVAYKYPPEEAQTKLLDIGVNVGRTGRVT
PFAYMEPVKVAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGS
EREFVMPTHCPECGTELAPAKEGDADIRCPNSRSCPAQLRERVFHVAGRGAFDIEGLGYE
AGIALLQAGVLTDEGDLFTLTEDDLLRTELFTTKGGMVSANGRRLLSNLGKAKAQPLWRV
LVALSIRHVGPTAARALATEFGSLDAIIEASEEQLAAVEGVGPTIAAAVKEWFTVDWHCA
IVEKWRAAGVRMADERDTGIPRTLEGLSIVVTGSLTGFSRDEAKEAIIARGGKAAGSVSK
KTDYVVAGDAPGSKYDKATELGVPVLDENGFRRLLEHGPQELAD
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtgagctccaaagacgccgaggcagcgctggccgaacaggccgaggacgccctcgatgcc
gacctgcgccgcgaatggcaggagctggccgacgaagtgcgcgagcaccagtttcgctat
tacgtgcgcgattcgccgatcatcaccgacgccgagttcgatgccttgctgcgccggctg
cagacgctcgaagaccagcatcccgagctgcgcacacccgactcgcccagccagctggtc
ggcggcgccggattcgccaccgacttcacacccgccgaacacctcgagccgatgttgagt
ctggacaacgtcttcgaccccgacgaactcgccgcctgggccgagcgcctcaagagcgag
atcggtgccgacccccactacctgtgcgagctcaagatcgacggcgtggcgctagcgctc
gtgtaccgcgacggcaagctcacccgagccgccacccgcggcgacggtcgcaccggggag
gacgtcacgctcaacgcgcgcaccatctccgacatccccgaacggctcaccccctccgat
gagttcccggtgcccagagtgctcgaggtgcgcggtgaggtgttcttccgggtcgccgat
ttcgcggagctcaacgcggggctcgtcgccgagggcaaggcgccgttcgccaacccccgc
aacagcgccgccgggtcgctgcggcagaagaatcccgcagtcaccgctcggcgcaagctg
cacatgatctgccacggcctcggccgggtaacgagtcctgcggggttcgggttcgcatcg
ctgcacgacgcgtaccgggcgctcaaacagtggggcctgccggtttccgagcacaccacc
cgggtgcaggggctcgacgcggtgaccgagcggatcgcgtactggggcgagcaccgccac
gacgtcgaatacgagatcgacggtgtggtcgtcaaggtcgacgagttctcgctgcagcgc
cggctgggctcgacgtcgcgggccccgcgctgggccgtggcctacaagtatccgccggaa
gaggcgcagaccaagctgctcgacatcggggtcaacgtgggccgaaccggccgcgtcacg
ccgttcgcctacatggagccggtaaaggtggccggttccaccgtcggattggcgacgttg
cacaacgcgtcggaggtcaagcgtaagggcgtgctcatcggcgacaccgtggtgatccgc
aaggccggtgacgtcatccccgaagtcctcggtccggtggtcgatctgcgcgacggctct
gagcgcgagtttgtgatgccgacgcactgcccggagtgcggcaccgaactggcgcccgcc
aaggagggcgacgccgacatccgctgcccgaactcgcgcagctgtccggcgcagttgcgg
gagcgggtgttccacgtcgccggccgcggcgcattcgacatcgagggcctcggctacgag
gcgggcatcgctctcctgcaggccggggtgctcaccgacgagggcgacctgttcacgctc
accgaggacgacctgctgcgcaccgaactgttcaccaccaaaggtggcatggtgtcggcc
aacggcaggcgactgctttccaacctcggcaaggccaaggcccagccgctgtggcgggtg
ctggtggcgctgtccatccgccacgtcggcccgacggcggcgcgggcgctggccaccgag
ttcggcagcctcgacgcgatcatcgaggcgtccgaagagcaactcgccgcggttgagggt
gtcggcccgaccatcgccgccgcggtcaaggagtggttcaccgtcgactggcactgcgcg
atcgtcgagaagtggcgcgcggcgggggtgcggatggccgacgaacgggacaccggcatc
ccccgtacgctggagggcctttcgatcgtcgtcaccgggtcgctcacggggttctcgcgg
gacgaggccaaggaggcgatcatcgcccgcggcggcaaggccgcggggtcggtgtcgaag
aagacggattatgtcgttgccggtgatgcccccggatccaagtacgacaaggcgaccgaa
ctgggcgtgccggtcctcgacgagaacggcttccgacggctgctggagcacgggccgcag
gagctggcggactag
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