Myotis daubentonii (Daubenton's bat): 132239757
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Entry
132239757 CDS
T10294
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
mdt Myotis daubentonii (Daubenton's bat)
Brite
KEGG Orthology (KO) [BR:
mdt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mdt03036
]
132239757 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
mdt03400
]
132239757 (SMCHD1)
Chromosome and associated proteins [BR:
mdt03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
132239757 (SMCHD1)
DNA repair and recombination proteins [BR:
mdt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
132239757 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
Ig_SMCHD1_6th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
132239757
NCBI-ProteinID:
XP_059562517
LinkDB
All DBs
Position
8:58645121..58798938
Genome browser
AA seq
2003 aa
AA seq
DB search
MAAAGGGGPSAGTGRGGRGDRCRKVYLFDRRKKESEQGDRVVQVGERSDYAGFRASVRQT
LGISPEEKFVITTTSRKEITSDNFDETVKDGVTLYLLQSVDQLLLTATKERIEFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRKIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELLLSKEDFEKKEKNKESIYSGFIRNRKPCDSVHITNDDE
RFLHCLISEEKEKDSFTAVVITGVQSEHIPYLKNYFHLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTATDSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCYIIEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCAPPKKRGLVPIECYNRISGALFTNDRFQVSTNKLTFMDLELKLKDKNTLFT
RISNGQEQRVKIDREFSFWLKDCHEKYDKQIKFTLFKGIITRSDLPSKKQGPWATYSAIE
WDGKIYKAGQMVKTIKTLPLFYGSIEKFFLYGNHDGEVYATGGEVQIAMEPRALYDETKI
VPIAKLDRTFAEKAVKKYVEDEMARLPDRLSVTWPEGDELFPNEIRPAGTTIGALRIEIL
NKKGEAMQKLPGTGHGGSKKLLVELKVILHTSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPCKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNI
PLEFQDEFGHASQLINDIQPVLEASGLSLQYEEITKGPNCIIRGVRAKGSVNSCQGKNFN
LKVILPGFKEDSQILKIRLLPGPPHQLKVKPDSEFLVIENGTAFPFQVEVLDESDNITTQ
PKLVVHCKFLGAPNLPVYTVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGEREIHV
TSTLAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGAKTVQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSALGIAGIGLDS
SQLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKEFVPVINGKELQHPLIVQLCDQWDNPAPVPLVKINIIKANNLKLTPSNQQYKTDERG
RANLGLFSVYAPRGKHTMQVKAIHNRNTIEGPIIKLMILPDPEKPVRLNVKYDKDTLFLA
GGTFTDFMITVISEDDSIIKNINPARITMKMWKHSNNGNRPPANAETFSCNKIKGNDKED
GCFYFRDKAIPHKVGTYCIQFGFMMDKALILNSEQIIIDVQPNQPMKLVPKIQPATPAVS
NVHSVANRTLVKDLHLIITDDFNNQTGLDLVGTVIATIKGSNEEDTDTPLFIGKVRTLEF
PFVKGSANITSLVLAENSPGKDSTEYLIKFELQLPDLSRTLESYSLPFMFSNDVKKQQQM
LAFAKQKDELSQSIEMYRTVFETSKQLIDEMKCQVEVAKSKEAQLRNELKTNNIDIPTTQ
QVPHIEALLKRKILEQEELKKKPRRSCTLPNYTKSSGNILGKIAHLAQIEDDKAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKNLPDWRRPLPHYRNGKLYFRP
IGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRREVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLVLGQQIDLLQQYRNALDKLNSLT
KELNSELEYLQSPEMKKKKQELDEREKTLKLMEQHLLGVTPTRKGSDSLGHPTKIEMTDC
PNPPKRMRREVTRQNRTVTKTNV
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggcggggactggaaggggcggccgaggcgac
cgctgcaggaaggtgtacttgttcgaccggcgcaagaaggagtcggagcagggcgaccgg
gtggtgcaggtcggggagcgctcggactacgcgggattccgcgcctcggtgcgccagaca
cttggcatttcacctgaggaaaaatttgttattacaacaacaagtaggaaagaaattacc
agtgataattttgatgaaactgttaaagatggagttactctatacctgctacagtcagtc
gaccagttactattaacggctacaaaagaaagaattgaattcctacctcactatgacaca
ctggttaaaagtggcatgtatgagtattatgcaagtgaaggacaaaatcctttgccattt
gctcttgcagaattaattgacaattcattgtctgctacttctcgtaacactgggattaga
aaaatacagatcaaattgcattttgatgaaacacaaggaaaacctgctgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaataactgggctgtgtataggctgtcc
aagtttacaaggcaaggagattttgaaagtgatcattcaggatatgttcgaccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttggaggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagactcccaagatgttcat
gagcttttgctttctaaagaagattttgagaagaaggagaaaaataaagagtcaatatat
agtggatttattagaaacagaaagccatgtgactctgttcacattacaaatgatgatgaa
agatttctacattgccttatctcagaggaaaaggaaaaagatagctttactgctgtggtt
atcacaggagtacaatcagaacacataccgtacttgaaaaattatttccatctttggaca
agacagttggcgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacgt
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaaa
gggaaggcacctaagattgtcaacctaagggaaatacaagatgacatgcagacgttgtat
ataaacacagcaactgatagttttgagttcaaagctcacgttgaaggagacggtgtagtg
gaagggattatccgatatcaccctttcttatatgatagagaaacttaccctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgattgttatataattgagaaa
gctgcaagaggaaaaaggcctatttttgaatgtttttggaatggacgactaataccatat
acatctgttgaagactttgactggtgtgctcctcctaagaagagagggcttgtaccaatc
gagtgctacaatagaatatctggtgcattattcactaatgacagattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggatttcaaatggacaggagcaacgagtgaaaattgacagagaattttctttctggctc
aaagactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaaggaataatt
acacgttctgatcttccttctaaaaagcagggcccctgggccacatactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagatggtgaagacaatcaagacacttcctctt
ttttatggaagcatagaaaaattttttctttatggtaatcatgatggagaagtatatgct
actggaggagaggtccaaattgcaatggaaccacgagcactgtatgatgaaacaaaaatt
gtgccaattgcaaaactggataggacctttgctgagaaagctgtaaaaaaatatgtagaa
gatgaaatggcaaggcttcctgataggttgtcagtaacttggcctgaaggagatgaatta
tttccaaatgaaattaggcctgctggaactaccattggtgcattaaggattgaaatactg
aataaaaaaggagaagcgatgcaaaagcttccaggaacaggtcatggagggtcaaagaaa
ctactggttgagctcaaagttatattacacacttcaagtggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aaattggggaattatacattaaaattacaagttgtattgaatgaaagtaatgcagacact
tatgctggaagaccactaccatgtaaagcaattaaattttctgttaaagagggtaagcca
gaaaaattttcatttggtcttctggatcctccttttcgtgttggagttccattcaatatc
cctctggagtttcaggatgaatttggtcatgctagtcaactaataaatgatattcagcca
gttcttgaagcaagtggtttatctttacaatatgaagaaataaccaagggaccgaattgt
ataattcgaggtgttagagctaagggctctgtaaattcttgtcaaggcaagaattttaat
ctgaaggttattcttccgggttttaaagaagactcacagattttgaaaattagattacta
ccaggtccccctcatcaattgaaagtgaaacctgattctgaatttttagttatagaaaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaatataacaacacaa
ccaaaattggttgttcattgtaagtttttaggtgctcctaatcttccagtctacactgtg
gattgcagtagttctggaaccagtattttatcaggacctgcaattcaagttcagaatatt
aagaaagaccagacgcttaaagctaaaattgaaatacctagttgtaaagatgtggcacct
gtggagaaaacgattaagttgcttcccagtagccatgttgcaagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacaccaagatgaggttaattggatagcaggc
gatgttatgcataatcttatctttcaaatgtatgatgaaggagaaagagaaatccatgta
acatcaactttagcggagaaaattaaagttaattggactcctgagattaacaaagaacac
ttgctgcaaggtctgcttcctgatgtacaagtaccaacatctgtaaaagatatgcgctat
tgccaggtttcatttcaggatgatcatgtgtctttggaaagtgcatttacagtaagaccc
ctacctgatgaacctaaacatctaaagtgtgagttgaaaggagcaaaaacagtacagatg
ggccaagagcttcaaggggaaatagttgtaatagttacagatcagtatggaaatcagatt
caagcattttcaccaagttctttatctgccttgggaattgctggtattggacttgatagc
tcacagttgaaaactacctttcaggaaaatacacagagtataagtgtaagaggcatcaaa
tttattccaggtcctcctggaaataaggatctttgttttacttggcgtgagttttctgac
tttattcgagtacagctaatttctggaccaccagctaaacttctccttatagactggcca
gaattaaaggagtttgttccagtaattaatggaaaagaattacagcatcctctcattgtt
caactttgtgatcagtgggataatccagcacctgtaccactggttaaaataaatatcata
aaagctaacaatttaaagctcacgccttcaaaccaacagtataaaacagatgaaaggggc
agggctaatttgggattgttcagtgtttatgcccctagaggaaaacatactatgcaggtg
aaagccatccataacaggaataccatagaaggacctataattaagttaatgattcttcca
gaccctgaaaaacccgttcgtctcaatgttaaatatgacaaagatactttatttttagca
gggggtactttcactgattttatgattactgttatttctgaagatgatagcatcattaaa
aatattaatccagcacgtattaccatgaaaatgtggaagcactctaacaatgggaaccga
ccaccagcaaatgcagaaacatttagttgtaataaaataaaaggtaatgacaaggaagat
ggctgcttctacttcagggataaagcaattcctcataaagtggggacatattgtatccag
tttggttttatgatggataaagcacttattcttaacagtgaacagattataattgatgtt
caacctaatcagcctatgaagttagtacctaaaattcagccagccacaccagctgtttca
aatgttcattcagttgccaataggaccctggtcaaagatttacatcttattatcacggat
gacttcaacaatcagactggacttgatttggttggcactgtaatagctaccatcaaaggt
tctaatgaggaagatactgatacaccactctttatcgggaaagttagaacacttgaattc
ccttttgtaaaaggttccgctaacatcacgagtctagtgctggcagaaaatagtcctgga
aaggatagtactgaatatcttattaaatttgagcttcagctaccagatttatcaagaaca
ttagaatcatatagtctaccatttatgttttctaatgatgttaagaagcagcaacaaatg
ctagcatttgcaaaacaaaaggatgaattatctcaatctattgaaatgtatagaactgta
tttgaaaccagcaaacagcttattgatgaaatgaagtgccaagttgaagtagcaaaatca
aaagaggcccagttgcgaaatgaactaaaaacaaataatattgacattcctacaacacaa
caggtgccacacattgaagcacttttaaaaagaaagatattagaacaagaagaactaaag
aaaaaaccaagaagatcatgtactcttccaaactatactaaaagcagtggaaatattttg
ggaaagattgcacacttggcacaaattgaagatgataaagctgcaatggttatttcttgg
catctggcaagtgatatggattgtgttgtaaccttgaccactgatgctgcacgtcgtatc
tatgatgaaacccaaggtcgtcagcaagtgttaccacttgattctatttataagaagaat
cttccagattggagaagacctctgcctcattatcgaaatggaaaattatattttagaccc
attggagatccagtctttgcccgagatttgttaacatttcctgataacatagaacattgt
gaaacagtatttggtatgctattaggagacaccattattttggataatttggatgctgcc
aatcattatagaagagaggttgtaaaaatcacacactgtcctacactgctcacaagagat
ggagatcgcattcgaagtaatggaaagtttgggggccttcagaataaagctcctccaatg
gacaaacttcggggaatggtatttggagctccagtaccaaagcagtgcctggtcttaggg
caacaaatagatcttcttcaacagtatcgtaatgctctggacaagttgaacagtttgacc
aaggaacttaacagtgaattagagtacctgcagtctcctgaaatgaaaaagaaaaagcaa
gaacttgatgaacgagagaaaactctgaaactaatggagcaacaccttctaggtgtgact
cccacacgtaagggcagtgattcattaggtcatccaacaaagattgaaatgacagattgt
ccaaatcctcctaaaagaatgagaagagaagttacaagacaaaataggactgtaaccaaa
acaaatgtgtga
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integrated database retrieval system
