Mycobacterium dioxanotrophicus: BTO20_23635
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Entry
BTO20_23635 CDS
T05102
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mdx
Mycobacterium dioxanotrophicus
Pathway
mdx03030
DNA replication
mdx03410
Base excision repair
mdx03420
Nucleotide excision repair
mdx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BTO20_23635
03410 Base excision repair
BTO20_23635
03420 Nucleotide excision repair
BTO20_23635
03430 Mismatch repair
BTO20_23635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdx03032
]
BTO20_23635
03400 DNA repair and recombination proteins [BR:
mdx03400
]
BTO20_23635
Enzymes [BR:
mdx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BTO20_23635
DNA replication proteins [BR:
mdx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BTO20_23635
DNA repair and recombination proteins [BR:
mdx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BTO20_23635
NER (nucleotide excision repair)
GGR (global genome repair) factors
BTO20_23635
MMR (mismatch excision repair)
DNA ligase
BTO20_23635
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BTO20_23635
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ART71134
UniProt:
A0A1Y0C7T1
LinkDB
All DBs
Position
complement(4859961..4862021)
Genome browser
AA seq
686 aa
AA seq
DB search
MTSSDVEDADLRRRWQELADEVREHQFRYYVRDAPVISDAEFDAMLRELQGLEDAHPELR
TPDSPTQLVGGAGFATDFTPAEHLERMLSLDNVFDSDELSAWAARISGETGDAAHYLCEL
KIDGVALALVYRDGRLVRAATRGDGRTGEDVTLNARTIDDIPERLTPSDEFPVPAVLEVR
GEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGLGYSE
GFSPASLHDAYRALGQWGLPVSAHTTKVSGVAAVAERIAYWGEHRHDVDHEIDGLVVKVD
EVALQRRLGSTSRAPRWAVAYKYPPEEATTKLLDIRVSVGRTGRVTPFAYMEPVKVAGST
VGLATLHNATEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTNCPECG
TRLAPAKEGDADIRCPNTRSCPAQLRERVFHVAGRGAFDIEGLGYEAATALLAGGVITDE
GDLFTLTADDLLRTALFTTKAGELSANGKRLLANLDKAKAQPLWRVLVALSIRHVGPTAA
RALATEFGSLDAIVEASEEQLAAVEGVGPTIAAAVVEWFTVDWHRAIVDKWRAAGVRMAD
ERDASVERTLEGLSIVVTGSLPGFSRDQAKEAIIARGGKAASSVSKKTAYVVAGDAPGSK
YDKAVELGVPILDEDGFRTLLAEGPA
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcgagcgacgtggaagacgctgacctgcggcgacgttggcaggaactggccgac
gaggtacgtgagcaccagttccggtattacgtcagggacgcgccggtcatctccgacgcg
gagttcgacgcgatgttgcgcgagttgcaggggctcgaggatgcccaccctgagctgcgg
accccggattcaccgacccagctggtcggtggcgcgggtttcgccaccgacttcacgccg
gccgagcatctggagcgcatgctgtcgctggacaacgtgttcgactccgatgagctgtcg
gcgtgggcggcccggatcagcggcgagaccggcgacgccgcccactacctgtgcgagctg
aagatcgacggggtggcactggcgctcgtctaccgtgacggccggctggtgcgcgccgcc
acccgcggcgacgggcgcaccggtgaggacgtgacgctcaacgcccgcaccatcgacgac
atccccgagcggctcaccccgtccgacgagttcccggtgcccgcagtgctcgaggtgcgc
ggcgaggtgttcttccgggtcgcagatttcgaggacctcaatgccggtttggtggccgag
ggcaagccgccgttcgccaacccccgcaacagcgcggcgggctcgctgcggcagaagaat
ccggcggtcacggcgcggcgccggttgcggatgatctgccacggcctgggctactcggag
ggattcagcccggcttcgctgcacgacgcctaccgcgcgctgggacagtgggggctaccg
gtgtcggcgcacaccaccaaggtgtccggggtcgccgcggtggccgagcgcatcgcctac
tggggtgaacaccgccacgacgtcgatcacgaaatcgacgggctggtggtcaaagtcgac
gaggtggcgctgcaacgcaggctcggctccacctcgcgcgccccgcgctgggccgtggcc
tacaagtacccgcccgaggaggccaccaccaagctgctcgacatccgggtcagcgtgggc
cgcaccggtcgggtcacgccattcgcgtacatggagccggtcaaggtcgccggttcgacg
gtcggtctcgcgacactgcacaacgccaccgaggtgaaacgcaagggtgtgctgatcggc
gacacggtcgtgatccgtaaggccggcgacgtcatccccgaggtgctcggtcccgtcgtg
gacctgagggacgggtctgaacgcgaattcgtcatgcccacaaactgtcccgaatgcggc
acccggctcgccccggccaaggaaggcgacgccgacatccgctgccccaacacccgcagc
tgcccggcgcagttgcgcgagcgggtgtttcacgtcgcgggccgtggtgcgttcgacatc
gaggggctcggttacgaggcggcgacggcgcttctggccggtggcgtcatcaccgacgag
ggtgacctgttcacgctgaccgccgacgatctgctgcgcaccgccttgttcaccaccaag
gcgggcgagctgtccgccaacggaaagcggctgttggccaacctcgacaaggccaaggcc
caaccgttgtggcgggttctggtggcgctgtccattcgccacgtgggccccaccgcggca
cgcgcgttggccactgagttcggcagcttggacgccatcgtcgaagcatccgaggaacag
ctcgccgcggtcgagggcgtcgggccgaccatcgccgccgcggtggtcgagtggttcacc
gtcgactggcaccgcgcgatcgtcgacaaatggcgcgcggccggggtgcggatggccgat
gaacgcgacgcaagtgtcgagcgcacgctggagggcctgtccatcgtggtcaccgggtcg
ctgcccggtttctcccgcgaccaggccaaggaagccatcatcgctcgcggtggcaaagcc
gccagctccgtgtcgaagaaaacggcctatgtcgtcgccggtgacgcgcccgggtcgaaa
tatgacaaggcggtcgaactcggggtgcccatcctcgacgaggacggattccggacgttg
ctcgcagaagggcccgcctga
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