Methylorubrum extorquens AM1: Mex_1p4228
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Entry
Mex_1p4228 CDS
T00921
Symbol
ragD
Name
(GenBank) Efflux transporter, RND family, membrane fusion protein subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
mea
Methylorubrum extorquens AM1
Pathway
mea01501
beta-Lactam resistance
mea01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
mea00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Mex_1p4228 (ragD)
01503 Cationic antimicrobial peptide (CAMP) resistance
Mex_1p4228 (ragD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mea03036
]
Mex_1p4228 (ragD)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
mea02000
]
Mex_1p4228 (ragD)
01504 Antimicrobial resistance genes [BR:
mea01504
]
Mex_1p4228 (ragD)
Chromosome and associated proteins [BR:
mea03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
Mex_1p4228 (ragD)
Transporters [BR:
mea02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
Mex_1p4228 (ragD)
Antimicrobial resistance genes [BR:
mea01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
Mex_1p4228 (ragD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-barrel_RND_2
BSH_RND
BSH_CzcB
YknX_C
HH_MFP_RND
BSH_CusB
RND-MFP_C
BSH_YknX
DUF4407
HH_AprE
Cep57_CLD
CzcB_C
HH_EMRA
Beta-barrel_RND
Motif
Other DBs
NCBI-ProteinID:
ACS41865
UniProt:
C5B248
LinkDB
All DBs
Position
complement(4313029..4314303)
Genome browser
AA seq
424 aa
AA seq
DB search
MTDGEDKKIPPPPGKGGFVWAGLIALGLLAYGGHSHWQRAARAESTRARQMEFVPKVRTE
EAKRLDGPIELTLPGQTEPFATARIYPRATGYIAERHVDLGSRVKKGDVLLRIAAPDLDQ
QLAQAEAQLGQLEAQLLRARAMVDQAKANTNLAQATNSRTSTLAGQGWASKQNADNTQAG
VLAQQANLASAEADVKVAQANIKAQQATVGRLKALTGFEVVTAPFDGVITTRNVDVGDLV
QADAGSGSPLLSMDRDDVLRISVNVPQNAAVGVQPGIAAQIKVPQMPDRSFAGVVERSSV
ALLASSRTLTTQVDVPNPDLTLRPGLYVYVTLAIPRTGGATVAVPAEALVFNQSGTRVAV
ASDDDRVRWVEVHVARDKGTVVEVDKGLSGGERLVLSPPADLKDGGRIAPQAPKSDKPMQ
AAQR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacggcgaggacaagaaaatcccgccgccgccgggcaagggcggcttcgtgtgg
gccgggctgatcgcgctcggcctgctggcctatggcggccacagtcactggcagcgggcg
gcccgggccgagtcgacgcgggcccggcagatggagttcgtgccgaaagtgcgcaccgag
gaggccaagcgcctcgacgggccgatcgagctgaccctgccgggccagaccgagcccttc
gccaccgcgcggatctatccccgcgccaccggatacatcgccgagcgccacgtcgatctc
ggttcgcgggtgaagaagggcgacgtgctcctgcgcatcgccgccccggatctcgaccag
caactcgcgcaagccgaggcgcagctcgggcagctcgaggcccagctcctgcgggcccgg
gccatggtcgatcaggccaaggccaacacgaacctcgcccaggccaccaactcgcgtacc
tcgacgcttgccggccagggctgggcctcgaagcagaacgccgacaacacccaggccggc
gtgctggcgcagcaggcgaacctcgcctcggcggaggccgacgtgaaggtggctcaggcc
aacatcaaggcgcagcaggcgaccgtggggcggctcaaggcgctgaccggcttcgaggtc
gtcaccgcccccttcgacggcgtgatcaccacccgcaacgtcgatgtcggcgacctcgtc
caggccgatgccggctcaggctcgccgctcctgtcgatggaccgggacgacgtgctgcgc
atctcggtcaacgtgccgcagaacgcggcggtgggcgtacagcccggcatcgcggcccag
atcaaggtgccgcagatgcccgaccgcagcttcgccggcgtggtcgagcgcagttcggtg
gcgttgctcgcctcctcgcgcaccctgacgacgcaggtcgatgtgccgaaccccgacctc
accctgcggccgggcctctacgtctacgtgaccctggcgatcccccgcaccggcggcgcc
acggtggcggttccggccgaggccctggtgttcaaccagtccggcacccgcgtggccgtc
gccagcgacgacgaccgcgtgcgttgggtcgaggtccacgtcgcccgcgacaagggcacg
gtggtcgaggtcgacaagggcctctcgggcggcgagcgcctcgtgctgagccccccggcc
gatctcaaggatggcggccgcatcgccccccaggcgccgaaatcggacaagccgatgcaa
gccgcgcagcgctaa
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