Mesorhizobium sp. AaZ16: ACG873_15675
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Entry
ACG873_15675 CDS
T10854
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
meaa Mesorhizobium sp. AaZ16
Pathway
meaa03030
DNA replication
meaa03410
Base excision repair
meaa03420
Nucleotide excision repair
meaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACG873_15675 (ligA)
03410 Base excision repair
ACG873_15675 (ligA)
03420 Nucleotide excision repair
ACG873_15675 (ligA)
03430 Mismatch repair
ACG873_15675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meaa03032
]
ACG873_15675 (ligA)
03400 DNA repair and recombination proteins [BR:
meaa03400
]
ACG873_15675 (ligA)
Enzymes [BR:
meaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACG873_15675 (ligA)
DNA replication proteins [BR:
meaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACG873_15675 (ligA)
DNA repair and recombination proteins [BR:
meaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACG873_15675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACG873_15675 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACG873_15675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACG873_15675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
XIK08485
LinkDB
All DBs
Position
complement(2752001..2754157)
Genome browser
AA seq
718 aa
AA seq
DB search
MSLTEKSIDDLTEAEASAELERLAREIAEHDRRYHAEDAPTISDAEYDALRLRNVAIEAK
FPELVREDSPSLKVGAAPAGAFGPVVHARPMLSLDNAFSDQDVIDFVASVRRYLALPADR
ELVFTAEPKIDGLSMSLRYENRRLMTAATRGDGTTGENVTANIRTIREIPHQLPKDAPDL
VEIRGEVYMRRDDFMELNKRMAETGRVFANPRNSAAGSLRQIDPSVTKTRPLRFFAYAWG
ETSAPLGETQFEVVRRFADWGFPVNERMVRCHSVEAIIKHYHAVEAERAALPYDIDGVVY
KVDRLDLQERLGFRSRSPRWATAHKFAAEKAMTVLNGIDIQVGRTGALTPVARLEPVTVG
GVVVTNATLHNEDYIKGIGNSGQPIREGRDIRVGDTVIIQRAGDVIPQILDIVPEKRPAN
AVPYKFPETCPHCGSHAVREEGEAVRRCTGGLICPAQAVERLRHFVARGAMDIEGLGEKQ
IEFFFNSEDPALRIRSPADIFTLKARQEKSLAKLENIDGFGTISVKKLFAAIDDRRKVEF
SRFLYALGIRHVGETNAKRLARHFISFATFREVAEGAAPPEGKGDPGNAAWQELNGVGGI
GAVVAEAVVEFFAEEHNREVVDALLKEVTPLDEARVGEVSSPVSGKTVVFTGSLERMSRD
EAKAMAEKFGAKVAGSVSKKTDLVVAGPGAGSKLKQAAELGIEVIDEDQWFERVGQGA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttaccgaaaaatccatcgacgacctgaccgaagccgaggcgtccgccgagctt
gaaaggctggcgcgggaaatcgccgaacatgaccggcgctaccatgccgaagatgcgcca
accatttctgacgccgaatacgatgcgctgaggctgcgcaacgtcgcaatcgaggcgaaa
tttccggaactggtgcgggaggattcgccgtctctaaaggtcggcgcagcgcctgccggc
gcgttcgggccggtggtgcatgcgcggcctatgctgtcgttagacaacgccttttccgac
caggacgtgatcgacttcgttgccagcgtgcgccgatatcttgcgctgccggcggacagg
gaactggtgttcacggcggagccgaagatcgacggcctttcgatgtcactgcgatatgag
aaccgccggctcatgacggcggcgacacgcggcgacggcacgaccggcgagaatgtgacc
gccaacatccgcaccattcgcgagattccgcatcaattgccaaaggatgcgccggacctg
gtcgaaattcgcggcgaggtctatatgcgccgcgacgatttcatggagctgaacaagcgc
atggccgagaccggccgggtgttcgccaatccgcgcaactcggcggcgggaagcctgcgc
cagatcgatccttcggtgacgaaaacgcggccgctgcggtttttcgcctatgcctggggc
gagaccagcgcgccgcttggcgaaacgcagttcgaggtggtgcggcgcttcgccgactgg
ggctttccggtcaacgagcggatggtgcgctgccattcggtcgaggcgatcatcaagcat
taccacgctgtcgaggctgagcgcgcggcgctgccctacgacatagacggcgtcgtctac
aaggtcgaccggctcgacctacaggagcggctcggcttccgctcgcgcagcccgcgttgg
gcgaccgcgcataaattcgcggccgagaaggcgatgaccgtgctcaacggcatcgacatc
caggtcggccgcaccggcgccttgacgccggttgcaaggctggaaccggtgaccgtgggc
ggcgtggtggtgaccaacgccacgctgcacaatgaggactacatcaagggcatcggcaat
agcggccagccgatccgcgagggccgcgacatccgcgtcggcgacacggtgatcatccag
cgcgccggcgacgtcatcccgcagatcctcgacatcgttccggaaaagcgcccggccaac
gccgtgccatacaaatttccggaaacctgtccgcattgcggcagccatgcggtgcgcgag
gagggcgaggcggtgcggcgctgcaccggcggcctgatctgcccggcgcaagcggtcgag
cggctgcgccatttcgtggcgcgcggcgcgatggacatcgaggggcttggcgaaaagcag
atcgagttctttttcaattccgaggacccggcgctcaggatacgctcgccggccgatatt
tttacgctcaaggcacggcaggaaaagtcgcttgcgaagctcgaaaacatcgacggcttc
ggcacgatttcggtgaagaagctgtttgcggcgatcgatgatcgccggaaggtcgagttt
tcccgcttcctttatgcgctcggcatccgccacgttggcgagaccaacgccaagcggctg
gcgcggcatttcatcagctttgctaccttccgcgaggtagcagagggcgcggcgccgcca
gaaggcaagggcgatcccggcaacgccgcctggcaggaactgaacggcgtcggcggcatc
ggcgcggtcgtggcggaggcggtcgtcgagttcttcgccgaggagcacaaccgcgaggtg
gtcgacgcgctgctgaaggaggtcacgccgctcgacgaggcgcgcgtcggcgaagtgtcg
tcgccggtttcgggcaagacggtggtgttcaccggctcgctggaaaggatgtcgcgcgac
gaggcaaaggcgatggccgaaaaattcggcgccaaggtcgcgggctcggtgtccaagaag
accgatctggtggtcgcgggaccgggcgccgggtccaaactgaagcaggccgccgaactc
ggcatcgaggtgatcgacgaggaccagtggttcgaaagggtggggcagggagcatag
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