Methylacidimicrobium sp. AP8: MTHMO_1849
Help
Entry
MTHMO_1849 CDS
T06915
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
meap
Methylacidimicrobium sp. AP8
Pathway
meap03030
DNA replication
meap03410
Base excision repair
meap03420
Nucleotide excision repair
meap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MTHMO_1849 (ligA)
03410 Base excision repair
MTHMO_1849 (ligA)
03420 Nucleotide excision repair
MTHMO_1849 (ligA)
03430 Mismatch repair
MTHMO_1849 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meap03032
]
MTHMO_1849 (ligA)
03400 DNA repair and recombination proteins [BR:
meap03400
]
MTHMO_1849 (ligA)
Enzymes [BR:
meap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MTHMO_1849 (ligA)
DNA replication proteins [BR:
meap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MTHMO_1849 (ligA)
DNA repair and recombination proteins [BR:
meap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MTHMO_1849 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MTHMO_1849 (ligA)
MMR (mismatch excision repair)
DNA ligase
MTHMO_1849 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MTHMO_1849 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
RNA_pol_A_CTD
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
CAB4244187
UniProt:
A0A7R8L8B9
LinkDB
All DBs
Position
I:1772670..1774697
Genome browser
AA seq
675 aa
AA seq
DB search
MTREEAARRHAWLVNEIRKHDYAYYVQATPLISDAEYDALFDELRALEERYPDLVTPDSP
TQRVGGGPLPGFAPVVHSIPMQSLDNTYSLAELFAFVDRVQRALPNERPTYVVEPKIDGV
SISVVYRNGLFDHGATRGDGRTGDDISANLRTIRALPLRLNFREPPELLEVRGEAYLPTR
AFEELNRERARRGEPLFANPRNATAGTLKQLDPRVVAQRPLSVVFYGAGELRGIACDSQE
HWYRILAEAGLPAPSRHWLCRTKEDLSEAVEALDDFRKGLPYATDGAVVKVNEWRFYRIL
GATARAPRWAIAYKYGAERARTRLRRVLFQVGRTGVITPVAEMDPVFLAGSTVRRATLHN
FDEVKRKGVRIGDWVYIEKAGEVIPAVVEVDRSARTGQEEEIVPPEHCPSCGSSLRWDGI
FLRCPNPKCPGQLKALLRHFAGRRAMDIEGLGESLIHQLVDKGLIKDLADLYSLSLEDLL
PLERMGRKSAENLLSAIEASKRRGLGRLLFGLGIPHVGETAAEALASRFQTLDRLLHATE
EEIESIPTVGPTVAKSVADYFRDPVNRARLDRLRQAGVVTEAERPLAAHGSLQGKTFVIT
GTLSEPRERIVERIREAGGRVTESVSRKTSFLIVGRDPGSKLNQARKHAVRVISEAELRS
LLEGGTNEDEAARAG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaccagagaggaagcggcgcgacggcatgcatggctcgtcaacgagatccgaaagcac
gattacgcctattatgtgcaagccacgccgctgatctcggatgccgagtacgacgcgctc
ttcgacgagctccgcgcgctggaggagcggtatccggatcttgtcaccccggattccccg
acgcagcgagtcggagggggtccgctgcccgggttcgccccggttgtgcattcgatcccg
atgcagagcctcgacaacacctactcgctcgcggagctcttcgccttcgtcgatcgggtg
caacgcgcgttgccgaacgagcggccgacttatgtcgtggagccgaagattgacggggtt
tcgatcagcgtcgtctatcggaacggcctcttcgaccacggcgcgacccggggggacggt
cggaccggtgacgacatcagcgccaacctccgcacgattcgggcccttccgcttcgcctg
aactttcgcgaaccgccggagctgctggaagtgcgcggggaggcctacctgcccacccgg
gcattcgaagaactgaacagagaacgcgcgaggcggggcgagccgctctttgcaaacccg
cgcaacgccaccgcgggcaccctgaagcagctcgacccccgagtcgtggcgcagcgtccg
ctttccgtcgtcttctacggagccggggagctgcggggcatcgcttgcgattcccaggaa
cattggtatcggatcctggcggaggccgggctgcccgccccttcccgccactggctctgc
cgaaccaaggaggatttgtccgaagccgtggaggctctggacgatttccggaagggcttg
ccctacgcgacggatggagccgtcgtgaaggtaaacgagtggcggttctaccgaatcctc
ggtgccacggccagagcgccacgctgggcgatcgcatacaaatacggagccgaacgcgcc
cggacccggctccgccgcgtcctctttcaagtgggcaggacgggagtcatcacgccggtc
gccgagatggaccccgtcttcctggccggatcgacagtcagacgcgcgaccctgcacaat
ttcgacgaggtcaagcgcaagggggtccggatcggcgactgggtgtacatcgaaaaggcg
ggggaggtcatccctgcggtcgtcgaggtcgatcgttccgcccgcaccgggcaagaagag
gaaatcgtgccgccggaacattgcccttcttgcgggagcagcctccgctgggacggaatc
ttcctccgctgcccgaatccgaagtgtcccgggcagctcaaggctctgctccgccatttc
gcgggccgaagagccatggatatcgaagggctcggcgaatcgttgattcaccaactggtg
gacaagggattgatcaaggatttggccgatctctactctctttcgctcgaagatctgctc
ccgctcgaacgaatgggaaggaaatccgcggaaaatctgctctcggcgatcgaagcgagc
aaacgccgagggctgggtcggcttctcttcggcttgggcatcccccacgtcggcgagacg
gctgcggaagcgcttgcgtcccggttccaaacgctcgatcggctcctgcatgccacggaa
gaggagatcgagagcattcccaccgtcggaccgaccgtcgccaagagcgtcgccgactac
ttccgcgatccggtcaaccgcgcgcgactcgaccggctccggcaagccggagtggtgacg
gaggccgaacgcccgctcgccgcgcacgggtcccttcaagggaagacgttcgtgatcacg
ggcacgctctccgagccgagggaacggatcgtggaaaggatccgcgaggcgggagggagg
gtcaccgaaagcgtctcccgaaagaccagctttctgattgtcggaagagatccgggatcc
aagctcaaccaagccaggaagcacgcagtgcgcgtgatttccgaagcagaattgcgcagc
ctcctcgagggagggacgaacgaggatgaagccgcccgagccggatga
DBGET
integrated database retrieval system
