Methylocystis echinoides: RVU70_04935
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Entry
RVU70_04935 CDS
T10963
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
meci Methylocystis echinoides
Pathway
meci03030
DNA replication
meci03410
Base excision repair
meci03420
Nucleotide excision repair
meci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RVU70_04935 (ligA)
03410 Base excision repair
RVU70_04935 (ligA)
03420 Nucleotide excision repair
RVU70_04935 (ligA)
03430 Mismatch repair
RVU70_04935 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meci03032
]
RVU70_04935 (ligA)
03400 DNA repair and recombination proteins [BR:
meci03400
]
RVU70_04935 (ligA)
Enzymes [BR:
meci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RVU70_04935 (ligA)
DNA replication proteins [BR:
meci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RVU70_04935 (ligA)
DNA repair and recombination proteins [BR:
meci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RVU70_04935 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RVU70_04935 (ligA)
MMR (mismatch excision repair)
DNA ligase
RVU70_04935 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RVU70_04935 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Zn_Ribbon_TF
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
XCP56480
LinkDB
All DBs
Position
complement(1037648..1039723)
Genome browser
AA seq
691 aa
AA seq
DB search
MTARQARAEHARLGEEIAEHDRRYYQEDAPVVSDADYDALRQRYEALEKAFPELVSAESL
TKKVGAKPSEKFAKVKHAAPMLSLGNVFSDEEVEDFVARVRRFLGLPQSAPLACTGEPKI
DGLSCSLRYENGRLVQAATRGDGYEGEDVTANIRTLKEAPERLHDGAPRILEVRGEVYMT
HADFAALNERQKAAGKQIFANPRNAAAGSLRQLDARITAERPLHFFAYGWGEVSALPATT
QWGVLEAFKAFGLKVNPRTRLCRSVDEMLAQYHAIEADRARLGYDIDGVVYKVDDIALQA
RLGFVSRAPRWAVAHKFPAERATTILRDIEIQVGRTGALTPVARLEPVTVGGVVVQNATL
HNEDEIARKDIRIGDTVVVQRAGDVIPQIVEVVTERRPPQAKPYEFPHVCPRCGSAALRE
IDEKTGEADVVRRCTGSLVCPAQAVERLKHFASRNAFDIEGLGDKQIEYFYHEGLIHTPS
DIFTLEERDRKSLTRIKNREGFGETSVKNLFAAIEARRRIPVNRFIYALGVRHIGETNAR
RLARHFGDFESLRETAREAAPGSEARARIDCIDGIGPAVAEALHDFFAEPHNEKELDALL
AQVRLEPMPEIASSSPVAGKTVVFTGSLERLTRDEAKAQAERFGAKVAASVSKKTDLVVA
GPGAGSKLAKAEELGIEVISEDEWFRRTGQG
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcccgccaggcgcgcgccgaacatgcgcggctcggggaagagatcgccgaacac
gaccggcgctattatcaggaagacgcgccggtcgtctcagacgccgattacgacgcgctg
cgccagcgttacgaagcgctggagaaggcgtttcccgagctcgtctcggcggagtcgctg
accaaaaaggttggcgccaagccgtcggaaaaattcgccaaggtgaaacacgccgcgccg
atgctttcgctcggcaatgtcttttccgatgaagaggtcgaggatttcgtcgcgcgcgtg
cgccgctttctgggcctgccgcaaagcgcgccgctcgcctgcacgggcgagccgaaaatc
gatggtctgtcttgctctctgcgatatgaaaacggccgcctcgttcaggccgcaacgcgc
ggcgacggctatgagggcgaggacgtcacggcgaatattcgcacgctcaaggaagcgccc
gagaggcttcacgatggcgcgccgcggattctggaggtgcgcggcgaggtctatatgacg
cacgccgatttcgccgcgctcaacgaacgccagaaggcggcgggcaagcagattttcgcc
aatccccgcaacgccgcggcgggctccctgcgccagctcgacgcgcgaatcaccgcggag
cggccgctgcattttttcgcctatggctggggcgaggtcagcgcgttgccggcgacaacg
caatggggcgtgctggaggcgttcaaagccttcggcctcaaggtcaatccgcgcacgcgg
ctctgccggagcgtcgacgaaatgctggctcaatatcacgcaatcgaggcggatcgcgcg
cggctcggctacgacatcgacggcgtcgtctacaaagtcgacgacattgcgctccaggcg
cggctcggcttcgtctcgcgggcgccccgctgggcggtggcgcataaattcccggccgag
cgcgcgacgaccattctgcgcgacatcgaaattcaggtcgggcgcaccggcgcgttgacc
cctgtcgcacggttggagccggtgacggtcggcggcgtcgtcgtgcagaacgcaacgctc
cacaatgaggacgagatcgcccgcaaggacattcgcatcggcgacaccgtcgtcgtgcag
cgcgccggcgacgtcattccgcaaatcgttgaggtcgtgaccgagaggcggccgccgcag
gccaagccctatgaatttccgcatgtctgcccgcgctgcggctcggcggcgttgcgcgag
atcgacgaaaagaccggcgaggccgacgtcgtgcgccgctgcaccggctcgctcgtctgt
cccgcgcaggcggtggagcgattgaagcatttcgcctcgcgcaacgccttcgacatcgaa
gggctcggcgacaagcagatcgagtatttctatcacgaggggcttatccacacgccctct
gatattttcacgctggaggagcgtgaccgcaaaagcctgaccaggatcaaaaaccgcgag
ggattcggcgaaacctcggtcaagaatctcttcgccgccatcgaggcgcggcggcgcatt
ccggtcaatcgcttcatttatgcgctgggcgtccgccatatcggcgagaccaatgcgcgc
cgactcgcccgccatttcggcgatttcgagtcgttgcgggagacggcgcgggaggcggcg
cccggctccgaggcgcgggcgcggattgactgcatcgacggaatcgggccggccgtcgcc
gaggcgctgcacgacttcttcgccgagccgcataatgagaaagagctcgacgcgctgctc
gcgcaggtgcggctcgagcccatgccggaaattgcatcgtcgtcgccggtcgccggcaag
acggtggtgttcacaggctccctcgagcgtctgacccgtgacgaggcgaaggcgcaggcc
gagcgcttcggcgccaaggtcgcagcgtcggtgtcgaagaaaaccgatctcgtcgtcgcg
ggtcctggcgcgggctccaagcttgccaaagcggaggagctggggatcgaggtgatctcg
gaagacgagtggttccggcggacggggcaggggtga
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