Methylosinus sp. C49: MSC49_30480
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Entry
MSC49_30480 CDS
T09855
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mecq
Methylosinus sp. C49
Pathway
mecq03030
DNA replication
mecq03410
Base excision repair
mecq03420
Nucleotide excision repair
mecq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mecq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSC49_30480 (ligA)
03410 Base excision repair
MSC49_30480 (ligA)
03420 Nucleotide excision repair
MSC49_30480 (ligA)
03430 Mismatch repair
MSC49_30480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mecq03032
]
MSC49_30480 (ligA)
03400 DNA repair and recombination proteins [BR:
mecq03400
]
MSC49_30480 (ligA)
Enzymes [BR:
mecq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MSC49_30480 (ligA)
DNA replication proteins [BR:
mecq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MSC49_30480 (ligA)
DNA repair and recombination proteins [BR:
mecq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MSC49_30480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSC49_30480 (ligA)
MMR (mismatch excision repair)
DNA ligase
MSC49_30480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSC49_30480 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BBU63113
LinkDB
All DBs
Position
complement(3240427..3242583)
Genome browser
AA seq
718 aa
AA seq
DB search
MSADDGRPSGKRAERKPTPIEDLSPRRAKLEYSRLAEQLAEYDRRYYQEDSPAVSDAEYD
ALRQRYEALEKAFPELSSDASLTKKVGAAPAEKFAKIKHVVPMLSLGNVFADEEVHDFVA
RVRRFLGFADDAPLFFTAEPKIDGLSCSLRYEKGALVYAATRGDGYEGEDITANIRTLEE
IPQRLNGESWPDVLEARGEVYMRREDFFALNERQAAANKPLFANPRNSAAGSLRQLDPSV
TASRPLRFFAYSWGEVSVMPSDTQYGMVQALASFGLPTNLGSPTEPLTKICAGAEEMLEH
FRRIEARRPTLDYDIDGVVYKVDDIGLQTRLGFVSRAPRWAVAHKFPAEQAKTIVRGIDI
NVGRTGALTPIARLEPVTVGGVVVSNATLHNEDEIARKDIRVGDTVVVQRAGDVIPQIVE
VVLDKRPEGTKPYEFPHVCPACGSAAVREIDEKGVADVVRRCTGSLVCPAQAIERLKHFA
SRNAMDIEGLGDKQIEAFFEEGLIRRASEIFTLEAHDEQNLTKLKNREGYGETSVRNLFA
AIDARRSVPINRFLFALGIRHVGETNAKRLARHFGDFASLRDTAREAAPGSEARERIESI
EGIGVVVAEALYDFFAETHNEDEIDALLTHLTLEPMPQIESASPVAGKTVVFTGALERLT
REEAKAQAERFGAKISGSVSKKTDLVVAGPGAGSKLAKAKELGVEVISEEEWFSRTGQ
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctgatgatggtcgcccctcgggcaaacgcgccgagagaaagcccacgccgatc
gaagatctctcgccgcggcgggcgaagctcgaatattcgcggctcgcggaacagctcgcc
gaatatgaccgccgctattaccaggaagactctcccgcggtcagcgacgccgaatatgac
gcgctgcgccagcgctatgaggcattggaaaaagcctttcccgagctttcgtccgacgcc
tcgctgacgaagaaggtcggcgccgcgccggcggagaaattcgcgaaaataaaacatgtc
gtgccgatgctctcgctcggcaacgtcttcgccgacgaggaggtccacgacttcgtcgcg
cgcgtgcggcgctttctgggctttgcggacgacgcgccgctcttcttcaccgcggagccg
aaaatcgacggcctctcctgctcgctgcgctatgagaaaggcgcgctggtctatgcggcg
acgcgcggcgacggctatgagggcgaggatatcaccgccaatattcgcacgctcgaggaa
attccgcagcgcctcaatggcgagagctggccggatgtgctggaggcgcgcggcgaggtc
tatatgcggcgcgaggatttcttcgcgctcaatgaaagacaggcggccgcgaataagccg
ctcttcgccaatccgcgcaattccgccgcaggctcgctgcgccagctcgatccgagcgtg
accgcgagtcgccctttgcgcttcttcgcctatagctggggcgaggtgagcgtcatgccg
tccgacacgcaatatggcatggtgcaggcgctggcgagcttcggcctgccgaccaatctc
ggctcgccgaccgaaccgctcaccaaaatttgcgccggcgccgaggagatgctcgagcat
tttcgtcgcatagaggcgcgccgcccgacgctcgactacgacatagacggcgtcgtctac
aaggtggacgatatcggcctgcaaacgcgcttgggcttcgtctcgcgggcgccgcgctgg
gcggtggcgcataaattcccggcggagcaggcgaagaccatcgtgcgcggcatagacata
aatgtcggccgcaccggcgcgctgacgccgatcgcgcggctggagccggtgacggtcggc
ggcgtcgtcgtctccaacgccacgctgcacaatgaggacgagatcgcgcgcaaggacatt
cgcgtcggcgatactgtcgtcgtgcagcgcgccggcgacgtcattccgcagatcgtcgag
gtcgttctcgataagcggccggaggggacgaagccttatgaattcccgcatgtctgcccg
gcctgcggctcggcggcggtgcgcgagatcgacgagaagggcgtcgccgatgtggtgcgc
cgctgcaccggctcgctggtttgtccggcgcaggcgatcgagcggttgaagcatttcgcc
tcgcgcaacgccatggacatagaagggctcggcgacaagcagatcgaggctttcttcgag
gagggcctcattcgcagggcttccgaaattttcacgctcgaggcgcacgacgagcagaac
ctcacgaaattgaagaatcgcgagggctatggcgagacctcggtgcgcaatctcttcgcc
gcgatcgacgcgcggcgcagcgttccgatcaatcgttttctgttcgcgctcggcattcgc
catgtcggcgagaccaacgccaagcgcctcgcgcggcatttcggcgatttcgccagcctt
cgcgatacggcgcgcgaggccgcgccgggaagcgaggcgcgcgagcgcatcgaatcgatc
gaaggcattggtgtcgtcgtcgccgaggcgctctatgatttcttcgccgagacgcataat
gaggacgagatcgatgcgcttctcacgcatctgacgctcgagcccatgccgcagatcgaa
agcgcctcgccggtcgccggcaagacggtggtgttcaccggcgcgctggagcggctgacg
cgcgaggaggccaaggcgcaggccgagcgcttcggcgcgaaaatctccggctccgtgtcg
aagaagaccgatctcgtcgtggccgggccgggcgccggctccaagctcgccaaggccaag
gaactcggcgtcgaggtcatcagcgaagaggaatggttttcgcgcacggggcaatag
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