Megasphaera elsdenii: MELS_1890
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Entry
MELS_1890 CDS
T01633
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
med
Megasphaera elsdenii
Pathway
med03030
DNA replication
med03410
Base excision repair
med03420
Nucleotide excision repair
med03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
med00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MELS_1890
03410 Base excision repair
MELS_1890
03420 Nucleotide excision repair
MELS_1890
03430 Mismatch repair
MELS_1890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
med03032
]
MELS_1890
03400 DNA repair and recombination proteins [BR:
med03400
]
MELS_1890
Enzymes [BR:
med01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MELS_1890
DNA replication proteins [BR:
med03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MELS_1890
DNA repair and recombination proteins [BR:
med03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MELS_1890
NER (nucleotide excision repair)
GGR (global genome repair) factors
MELS_1890
MMR (mismatch excision repair)
DNA ligase
MELS_1890
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MELS_1890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
RNA_pol_A_CTD
HHH_3
RNA_ligase
BRCT_2
Zn_ribbon_NUD
DUF4796_N
Auto_anti-p27
zf-tcix
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
CCC74108
UniProt:
G0VS68
LinkDB
All DBs
Position
complement(2078671..2080662)
Genome browser
AA seq
663 aa
AA seq
DB search
MDTEKARLLELRKKIDELSYQYYTLDKPTVTDYEYDMMYRELENIEKAHPDWVTPDSPTQ
RVGSKISGGFEKYTHDRPMLSLGDVFSDDELREFDQRVRSDLGGESLEYVVELKIDGLAV
NLIYEQGQFIRGVTRGDGVVGEDITNNVRTIRTIPLHIASDSPHIEIRGEVYMPITSFEA
LNQQRRDDELEPFANPRNAAAGSLRQLDPRITAQRKLAFFAYALGGNSGIEIKSQEELLQ
DLAQFHFQVNPEYRKFTDIEDVITFIHSWDDRRDSLPYATDGMVVKVNSFAQQARLGNTV
KIPRWAIAYKFPPEQAKTKVLGISVSLGRTGVLTPAADLEPVHLAGTTVKRATLHNEDYI
KEKDIRIGDTVVIQKAGEIIPEVVRSLPERRDGSETVFTMPTTCPACGSPVVRRDGEAAW
RCTNPDCPAVIGEKIAHFVSRDAMNIDGLGDAIVQQLLAQGLIHDVADIYGLTKEELVDL
EGFGEKSADNLLKAIETSKSVGLARVLFALGIRFVGAKAGRVLAESFGSVDALMKASTED
LTAIDDIGPRIADSIVAYFRDAKNQALIEKLRAHGVDMTAEKKTLINTTFDGEIVVLTGK
LQMFSRKEAEQAVEARGGKCTSSVTKKTTLVVVGTDPGSKYEKAKKLGTPIISENEFKEW
LER
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggatactgaaaaagcgcgtctcttggagctgcgcaaaaaaatagatgaattgagttat
cagtattacaccctcgacaaaccgacggtgactgattatgaatacgatatgatgtaccgg
gaactggaaaacatcgaaaaagcccatcccgactgggtcacgcccgattcgccgacacag
cgcgtaggttctaagatttccggcggctttgaaaaatacactcacgaccggcccatgctc
agcttgggcgacgttttcagcgacgatgaattacgggaattcgaccagcgcgtccgcagc
gatttaggcggtgaatccttggaatacgtcgtcgaactgaaaatcgatggcctggcagtc
aacctcatttacgaacaggggcagttcatccgcggcgtcacccgcggcgacggcgtcgtc
ggcgaagacattaccaacaacgtgcgcaccatccgcaccatacccttacatatcgccagc
gattcgccgcacatcgaaatccgcggcgaagtctacatgcccatcacgtcatttgaagcc
ttgaaccagcagcgccgcgacgacgaactggaaccctttgccaatccccgcaacgccgct
gccggctccctgcgccagctcgacccgcgcattacagcccagcgtaaactggccttcttt
gcctatgccttgggaggcaacagcggcattgaaatcaagagccaagaagaattgctccag
gacttggcgcagttccatttccaagtcaatccggaataccgcaagtttacggacatcgaa
gacgtcattaccttcatccacagctgggacgaccgccgcgacagcctgccttatgcgaca
gacggcatggtcgtcaaggtcaattcctttgcccagcaggcccgcttagggaacaccgtc
aaaattccccgctgggctattgcctataaattcccgcctgaacaggccaagacgaaagta
ctcggcatttccgtcagcctcggccggacaggcgtcctgacgccggctgccgatctcgaa
ccagtccatctggctgggacgacggtcaagcgggcgacgctgcacaacgaagattacatc
aaagaaaaagatatccgcatcggtgataccgtcgtcatccagaaagccggtgaaattatc
ccggaagtcgtccgctccttgccggaacggcgtgacggttcggaaacagtcttcaccatg
ccgacgacctgcccggcctgcggcagtcctgtcgttcgccgcgacggggaagcggcttgg
cgctgcactaacccggattgcccggcagtcatcggtgaaaaaatcgcccacttcgtttcc
cgcgatgccatgaacatcgacggcctgggtgacgccatcgtccagcagctcctggctcag
gggctcattcacgacgtagccgacatctacggcttgactaaagaagaactagtcgacctc
gaaggcttcggcgaaaaatcagccgataacctgctcaaagccatcgaaacgagcaagtcc
gtcggcctggcccgggtcctctttgccttgggcatccgcttcgtcggagccaaagctggc
cgcgtcctggccgaatccttcggctctgtcgacgccctcatgaaagccagcacggaagac
ctgacggccatcgatgacatcggcccgcgcattgccgacagcatcgtagcttatttccgc
gatgccaagaaccaggctctcatcgaaaaattgcgcgcccacggcgtcgacatgacggcg
gaaaagaagaccctcatcaacacgacctttgacggcgaaatcgtcgtcctcacagggaaa
ttacagatgttcagccgcaaagaagccgaacaggccgtcgaagcgcgaggcggtaaatgc
acgtcctctgtcaccaagaagaccaccctcgtcgtcgtcggaaccgacccgggcagcaaa
tacgaaaaagccaagaaactgggcacacccatcatcagcgaaaacgaattcaaagaatgg
ctggaacgctaa
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