Methylomonas sp. EFPC3: PL263_06225
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Entry
PL263_06225 CDS
T10335
Name
(GenBank) helix-hairpin-helix domain-containing protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
meec Methylomonas sp. EFPC3
Pathway
meec03030
DNA replication
meec03410
Base excision repair
meec03420
Nucleotide excision repair
meec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PL263_06225
03410 Base excision repair
PL263_06225
03420 Nucleotide excision repair
PL263_06225
03430 Mismatch repair
PL263_06225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meec03032
]
PL263_06225
03400 DNA repair and recombination proteins [BR:
meec03400
]
PL263_06225
Enzymes [BR:
meec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PL263_06225
DNA replication proteins [BR:
meec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PL263_06225
DNA repair and recombination proteins [BR:
meec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PL263_06225
NER (nucleotide excision repair)
GGR (global genome repair) factors
PL263_06225
MMR (mismatch excision repair)
DNA ligase
PL263_06225
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PL263_06225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Phage_YunG-like
Motif
Other DBs
NCBI-ProteinID:
WFP51618
LinkDB
All DBs
Position
1386611..1388566
Genome browser
AA seq
651 aa
AA seq
DB search
MLSDSQKRLLQQTGDELQDIGEHRFCELCRHPQQIESTADNELIAFLKVANALYRGGEPA
ISDSDYDFVFLAELKQRHPEHPLLHEVEPEPAFAGKTVDLPVMMLSTDKAYSRDEVERWA
ARIEKAAEELGQNFAELQFKITPKLDGYAAYDDGRMLYTRGDGRKGQDISRVFERGLQVA
NQGQRGLGAGEIVVSRSYFDRNLADFFDNPRNFQASVIKEKELDEHAQQAINDHAAVFYP
FALLPAWTGAWAELIADFESHVKTIWHKVDYDVDGVILEIADEGLKTYLGATRHHHRWQL
AYKENLETAEVRILHVLPQTSRSGRITPVAELEPTRLSGALLSRATAHHYKMVLDKGIGP
GALIRLARSGEVIPKIEAVIRPAEPDIPEACPSCGHALIWDNDYLLCPNNLACPAQISNS
MEHFFRVLKNNDGFGAASIKRLYEHGIRRVDQIYALSAEQFEGMGFGPKQSQNLVDQLLR
SRREAVEDWRFLAAFGVFRMGLGNCERLLAHYPLQAIFELSEADIVAIEGFAEKTAAVIT
EGFANIKPLFDNLMALGFNLQASQAQPDENAHPLAGKTLVFTGTLHSGSRDELSKQAKAK
GAKVGSSVSAKTDYLVAGDNVGANKTNAAREKGVEVISEQEFLALLNGDTA
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgctcagcgacagccaaaaacgcctgctccaacaaaccggagacgagttgcaggacatc
ggcgaacaccgtttttgcgagctgtgtcgccatccgcagcaaatcgaatcgaccgccgac
aacgagttgatcgcctttttgaaagtcgccaacgccctctaccgcggcggcgaaccggcg
atcagcgacagcgactacgatttcgtgtttctggccgaactgaaacagcgccacccagaa
catccattgctgcacgaagtggagccggaaccggccttcgccggtaaaaccgtcgatctg
ccggtgatgatgctatcgaccgacaaggcctacagccgcgacgaagtcgaacgctgggcg
gcgcgcatcgaaaaagcggcggaagaactgggccagaactttgccgagctgcaattcaag
atcacgccaaaactggacggttacgccgcctacgacgacggccgcatgctgtatacccgc
ggcgacggccgcaaaggccaggacatcagccgcgtgttcgagcgcggcctgcaagttgcc
aaccaaggccagcgcggcctgggcgccggcgaaatcgtggtcagccgcagttatttcgat
cggaacctggccgactttttcgacaacccgcggaattttcaggccagcgtgatcaaggaa
aaagagctggacgaacacgcccaacaagccatcaacgaccatgccgcggtattttatccg
tttgcgttactgccggcctggaccggcgcctgggccgaattgatcgccgacttcgagagc
cacgtcaaaaccatctggcataaagtcgactacgacgtcgacggcgtgattctggaaatc
gccgacgagggattgaaaacgtatttaggcgccacccgccaccaccaccgctggcagttg
gcgtacaaggaaaatttggaaaccgccgaagtcagaattttgcatgtcttgccgcaaacc
tcgcgctcgggccggattacgccggtcgccgagctggaaccgacccgactcagcggcgcc
ctgctgtcgcgggcgacggcccaccattacaaaatggtgctggacaagggcataggtccc
ggcgcgctgatccgcctggcacgttccggcgaggtgattccgaaaatcgaggcggtcatc
cgcccggccgaacccgacatccccgaggcctgtcccagttgcggccacgccttgatttgg
gataacgactacctgctttgcccgaacaatctggcttgtccggcacaaatcagcaacagc
atggagcatttcttcagggtattgaaaaacaacgacggtttcggcgccgccagcatcaaa
cgtctgtacgaacacggtatccgccgcgtcgaccaaatctacgccctcagcgccgagcaa
ttcgaaggcatgggcttcggcccgaaacaatcgcaaaatctggtcgaccagttgttgcgc
agccggcgcgaagcggtcgaagactggcgcttcctggccgcgttcggcgtgttccgcatg
ggcttgggcaattgcgaacgtttgctggcccactaccccctgcaagctatcttcgaattg
agcgaagccgatatcgtcgcgatcgaaggctttgccgaaaaaactgccgccgtgattacc
gaaggcttcgccaatatcaaacccttgttcgataatttaatggcgctgggatttaactta
caggccagtcaggcgcaacccgacgaaaacgcgcacccgttggccggcaaaaccctggta
tttaccggcactttgcacagcggcagccgcgatgagcttagcaaacaagccaaagccaag
ggcgccaaagtcggtagttcggtatcggccaagaccgactatctggtggccggcgacaat
gtcggcgccaacaaaaccaacgccgcccgcgaaaaaggcgtcgaggtaatcagcgagcag
gaatttctggccttgctaaacggagacacagcatga
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