Methylophaga nitratireducenticrescens: Q7A_1905
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Entry
Q7A_1905 CDS
T02055
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mej
Methylophaga nitratireducenticrescens
Pathway
mej03030
DNA replication
mej03410
Base excision repair
mej03420
Nucleotide excision repair
mej03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q7A_1905
03410 Base excision repair
Q7A_1905
03420 Nucleotide excision repair
Q7A_1905
03430 Mismatch repair
Q7A_1905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mej03032
]
Q7A_1905
03400 DNA repair and recombination proteins [BR:
mej03400
]
Q7A_1905
Enzymes [BR:
mej01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q7A_1905
DNA replication proteins [BR:
mej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q7A_1905
DNA repair and recombination proteins [BR:
mej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q7A_1905
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q7A_1905
MMR (mismatch excision repair)
DNA ligase
Q7A_1905
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q7A_1905
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Zn_ribbon_NUD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AFI84722
UniProt:
I1XK03
LinkDB
All DBs
Position
1946654..1948666
Genome browser
AA seq
670 aa
AA seq
DB search
MTISPEISERAAQLRDLINRYNFLYYSADDPEVTDAEYDRLFAELKKLEADYPELITADS
PTQRVGSAPLDKFTQVTHAMPMLSLDNVFDEAELTAFNQRVLDRLNTDAVITYAAEPKLD
GLAISIRYENGLLVQAATRGDGAVGEDVTENVRTIRNVPLKLHGKNVPQVVEIRGEIYMP
KAGFEKLNQQRLANNEKLFVNPRNAAAGSLRQLDSSVTASRPLALFCYGLGELQGMERPS
SHTEAMQIISEWGGAVSPDTKQLKGVDECLEYLHQLGERRASLSYDIDGVVFKVDDSRLQ
ERLGFVSRAPRWAIAYKFPAQEESTQVVDIEVQVGRTGALTPVARLQPVFVGGVTVSNAT
LHNEDEVRRKDVRIGDTVIIRRAGDVIPEVVQVVKDKRPANATEFVMPTHCPVCGAEVER
VEGEAVARCSGGLFCGAQRKEAIKHFASRKALDIDGLGDKLVEQLVDAELIKDPADLFYL
NKEQFSALDRMGEKSAENLVNALEQAKNTRFARFLYALGIREVGEATARSLALHFVELDK
LTVAKEDELIEIEDVGPVVAHHIYTFFQQTHNLDVIQRLLDAGVNWPEEKPVYADSALAG
KTIVLTGTLENLSRSEAKEKLLALGAKVAGSVSAKTDYVVAGRDAGSKLNKAQSLGIDVV
DEATLIQWIN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgacgatttcacctgaaatcagcgagcgagccgcacagcttcgagacttaatcaaccgt
tataactttctgtattacagcgcggatgatccggaagtaaccgacgccgaatatgatcgg
ttatttgctgaattaaaaaaactcgaagccgattaccctgaactgatcactgcggattca
ccgacacaacgggtgggatcggctccgttggataaatttacccaagtgactcatgcgatg
cccatgttgtcgctggataatgtgtttgatgaagccgaattgaccgcgtttaatcagcgt
gttctggatcgtctcaataccgatgctgtgattacttatgctgctgaacccaagctggat
ggtctggccatcagtattcgatatgaaaatggtttactggttcaggctgccactcgtggt
gatggcgcggtgggtgaagatgtcaccgaaaacgttcgaaccatccgcaatgtcccattg
aaactgcacggcaaaaatgttccgcaagtagttgaaatccgtggtgaaatttatatgcct
aaagcgggttttgaaaagcttaatcaacaacgtctggccaacaatgaaaaactgttcgtt
aacccacgcaatgctgctgcaggctcattaaggcaactcgattcctcggtaacggctagt
cgacctttagcattgttctgttatggccttggagaacttcagggcatggagcgtccatcc
agccatacagaagccatgcagataatcagcgaatggggtggagctgtttctcctgatacc
aaacaattaaagggtgttgatgaatgcctggagtatctgcatcagcttggggagcgccgg
gccagtttgtcctatgatattgatggggtggtgttcaaagtcgatgacagccgtttgcag
gaacgtttggggtttgtctcacgtgcaccgcgttgggcaattgcctataaatttccggca
caggaagaaagcactcaggttgtcgatattgaagttcaggttggccgcaccggtgcatta
accccggtagcgcgtttgcaaccggtttttgtcggtggtgttacggtgagtaatgccacg
ctgcataatgaggatgaagtccgacgtaaggatgttcgaattggcgatacggtgattatt
cgccgggcaggggatgtgattcctgaagtcgttcaggtagttaaagacaagcgtcctgcc
aatgccaccgagttcgtaatgccaacgcattgtccagtttgcggggcagaggttgaaagg
gtagaaggtgaagccgtagcgcgttgcagtggtggtttattctgtggcgcacaacgcaag
gaggccataaaacattttgcctcgcgcaaagctctggatattgatggtctaggcgataag
ctggttgaacaactggttgatgctgagctcattaaagatccagcggatttgttttatctg
aacaaagaacagttttcggctttggaccgtatgggtgaaaaatctgccgaaaacttggtt
aatgcattagagcaagccaaaaatacccgttttgcacgatttttatatgcattaggcatt
cgagaagtcggtgaagcgaccgcccgatcactcgctttacactttgttgagctggataaa
ttaacggtagctaaagaagacgagctcattgaaattgaagatgtggggccagtagttgcc
catcatatttatactttcttccaacaaacccacaatctggatgtgattcagcggttgttg
gatgccggggtcaattggccggaagaaaaaccggtttatgcggattcagctttggctggt
aaaaccattgtactaaccggaaccctggaaaacctgtcgcgtagcgaagccaaagaaaag
ttattggcattgggtgccaaagtggctggtagcgtttcagccaaaaccgattatgtggta
gcgggtagagacgccggttccaaattgaataaagcccaatctctcgggattgatgtggtc
gatgaagcgaccctaatacagtggattaattaa
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