KEGG   PATHWAY: meku02010
Entry
meku02010                   Pathway                                
Name
ABC transporters - Metabacillus elymi
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
meku02010  ABC transporters
meku02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Metabacillus elymi [GN:meku]
Gene
HUW50_00120  [KO:K23060]
HUW50_00125  [KO:K17077]
HUW50_00130  [KO:K23059]
HUW50_00955  [KO:K02036] [EC:7.3.2.1]
HUW50_00960  pstA; phosphate ABC transporter permease PstA [KO:K02038]
HUW50_00965  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
HUW50_00970  [KO:K02040]
HUW50_01030  [KO:K09816]
HUW50_01035  [KO:K09817] [EC:7.2.2.20]
HUW50_02690  [KO:K16918]
HUW50_02695  [KO:K16920]
HUW50_02700  [KO:K16919]
HUW50_02705  [KO:K16921]
HUW50_02865  [KO:K09815]
HUW50_02890  [KO:K11709]
HUW50_02895  [KO:K11708]
HUW50_02900  [KO:K11710] [EC:7.2.2.5]
HUW50_02905  [KO:K11707]
HUW50_03165  [KO:K18888]
HUW50_03170  [KO:K18887]
HUW50_03345  [KO:K15553]
HUW50_03350  [KO:K15554]
HUW50_03355  [KO:K15555] [EC:7.6.2.14]
HUW50_03870  [KO:K18890]
HUW50_03875  [KO:K18889]
HUW50_03955  [KO:K10119]
HUW50_03960  [KO:K10118]
HUW50_03965  [KO:K10117]
HUW50_04590  [KO:K03523]
HUW50_04840  [KO:K02073]
HUW50_04845  [KO:K02072]
HUW50_04850  [KO:K02071]
HUW50_05185  [KO:K16785]
HUW50_05265  [KO:K10119]
HUW50_05270  [KO:K10118]
HUW50_05275  [KO:K10117]
HUW50_05860  [KO:K10117]
HUW50_06150  [KO:K10440]
HUW50_06155  [KO:K10441] [EC:7.5.2.7]
HUW50_06160  [KO:K10439]
HUW50_06415  [KO:K15772]
HUW50_06420  [KO:K15771]
HUW50_06425  [KO:K15770]
HUW50_06455  [KO:K09811]
HUW50_06460  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
HUW50_06670  [KO:K09691] [EC:7.5.2.14]
HUW50_06675  [KO:K09690]
HUW50_06935  [KO:K20459]
HUW50_06940  [KO:K20460]
HUW50_06945  [KO:K20461]
HUW50_07060  [KO:K15770]
HUW50_07065  [KO:K15771]
HUW50_07070  [KO:K15772]
HUW50_07275  [KO:K17318]
HUW50_07280  [KO:K17320]
HUW50_07285  [KO:K17319]
HUW50_07390  tagH; teichoic acids export ABC transporter ATP-binding subunit TagH [KO:K09693] [EC:7.5.2.4]
HUW50_07395  [KO:K09692]
HUW50_07490  [KO:K02011]
HUW50_07495  [KO:K02010] [EC:7.2.2.7]
HUW50_07500  [KO:K02012]
HUW50_07660  [KO:K17317]
HUW50_07665  [KO:K17316]
HUW50_07670  [KO:K17315]
HUW50_08280  [KO:K17318]
HUW50_08285  [KO:K17320]
HUW50_08290  [KO:K17319]
HUW50_08735  [KO:K17318]
HUW50_08740  [KO:K17320]
HUW50_08745  [KO:K17319]
HUW50_08765  [KO:K17320]
HUW50_08770  [KO:K17319]
HUW50_08775  [KO:K17318]
HUW50_08790  [KO:K18890]
HUW50_08795  [KO:K18889]
HUW50_10055  [KO:K16786] [EC:7.-.-.-]
HUW50_10060  [KO:K16787] [EC:7.-.-.-]
HUW50_10065  [KO:K16785]
HUW50_10130  nikA; nickel ABC transporter, nickel/metallophore periplasmic binding protein [KO:K15584]
HUW50_10135  nikB; nickel ABC transporter permease subunit NikB [KO:K15585]
HUW50_10140  nikC; nickel ABC transporter permease subunit NikC [KO:K15586]
HUW50_10145  nikD; nickel import ATP-binding protein NikD [KO:K15587] [EC:7.2.2.11]
HUW50_10150  nikE; nickel import ATP-binding protein NikE [KO:K10824] [EC:7.2.2.11]
HUW50_10855  [KO:K17319]
HUW50_10860  [KO:K17320]
HUW50_10865  [KO:K17318]
HUW50_11225  [KO:K17319]
HUW50_11230  [KO:K17320]
HUW50_11235  [KO:K17318]
HUW50_11270  [KO:K03523]
HUW50_11520  [KO:K10036]
HUW50_11525  [KO:K10037]
HUW50_11530  [KO:K10038] [EC:7.4.2.1]
HUW50_11580  [KO:K02010] [EC:7.2.2.7]
HUW50_11585  [KO:K02011]
HUW50_11590  [KO:K02012]
HUW50_11610  [KO:K18887]
HUW50_11615  [KO:K18888]
HUW50_11620  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K05816] [EC:7.6.2.10]
HUW50_11625  [KO:K05814]
HUW50_11630  [KO:K05815]
HUW50_11635  [KO:K05813]
HUW50_11650  [KO:K16919]
HUW50_11655  [KO:K16921]
HUW50_11880  [KO:K10439]
HUW50_12475  [KO:K02044]
HUW50_12480  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
HUW50_12485  [KO:K02042]
HUW50_12490  [KO:K02042]
HUW50_12715  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
HUW50_13205  [KO:K10010] [EC:7.4.2.1]
HUW50_13210  [KO:K10009]
HUW50_13215  [KO:K02424]
HUW50_13595  [KO:K15580]
HUW50_13600  [KO:K15581]
HUW50_13605  [KO:K15582]
HUW50_13610  [KO:K15583]
HUW50_13615  [KO:K10823]
HUW50_14060  [KO:K15555] [EC:7.6.2.14]
HUW50_14065  [KO:K15554]
HUW50_14070  [KO:K15553]
HUW50_14270  [KO:K10439]
HUW50_14275  [KO:K10441] [EC:7.5.2.7]
HUW50_14280  [KO:K10440]
HUW50_14305  [KO:K10439]
HUW50_14335  [KO:K10439]
HUW50_14560  [KO:K17319]
HUW50_14565  [KO:K17320]
HUW50_14570  [KO:K17318]
HUW50_14635  [KO:K17235]
HUW50_14640  [KO:K17236]
HUW50_14650  [KO:K17234]
HUW50_14735  [KO:K10439]
HUW50_15160  [KO:K02044]
HUW50_15165  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
HUW50_15170  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
HUW50_15175  [KO:K02042]
HUW50_15200  [KO:K17318]
HUW50_15205  [KO:K17319]
HUW50_15210  [KO:K17320]
HUW50_15290  [KO:K10188]
HUW50_15295  [KO:K10189]
HUW50_15300  [KO:K10190]
HUW50_15365  [KO:K17318]
HUW50_15370  [KO:K17319]
HUW50_15375  [KO:K17320]
HUW50_15395  [KO:K23508]
HUW50_15400  [KO:K10820] [EC:7.5.2.9]
HUW50_15405  [KO:K23509]
HUW50_15410  yjfF; sugar ABC transporter permease YjfF [KO:K23509]
HUW50_15460  [KO:K10439]
HUW50_15465  [KO:K10439]
HUW50_15470  [KO:K10441] [EC:7.5.2.7]
HUW50_15475  [KO:K10440]
HUW50_15530  [KO:K17318]
HUW50_15555  [KO:K17319]
HUW50_15560  [KO:K17320]
HUW50_15565  [KO:K17318]
HUW50_15705  [KO:K10441] [EC:7.5.2.7]
HUW50_15710  [KO:K10440]
HUW50_15715  [KO:K10439]
HUW50_15735  [KO:K17319]
HUW50_15740  [KO:K17320]
HUW50_15745  [KO:K17318]
HUW50_15845  [KO:K17319]
HUW50_15850  [KO:K17320]
HUW50_15855  [KO:K17318]
HUW50_15870  [KO:K10240]
HUW50_15875  [KO:K10241]
HUW50_15880  [KO:K10242]
HUW50_16450  [KO:K10117]
HUW50_16455  [KO:K10118]
HUW50_16460  [KO:K10119]
HUW50_16510  [KO:K10240]
HUW50_16515  [KO:K10241]
HUW50_16520  [KO:K10242]
HUW50_16910  [KO:K10117]
HUW50_16915  [KO:K10118]
HUW50_16920  [KO:K10119]
HUW50_17260  [KO:K18887]
HUW50_17265  [KO:K18888]
HUW50_17340  [KO:K15770]
HUW50_17345  [KO:K15771]
HUW50_17350  [KO:K15772]
HUW50_17405  [KO:K10117]
HUW50_17410  [KO:K10118]
HUW50_17415  [KO:K10119]
HUW50_17510  [KO:K03523]
HUW50_17535  [KO:K10439]
HUW50_17555  [KO:K10546]
HUW50_17560  [KO:K10548] [EC:7.5.2.-]
HUW50_17565  [KO:K10547]
HUW50_17620  [KO:K17318]
HUW50_17625  [KO:K17319]
HUW50_17630  [KO:K17320]
HUW50_17715  [KO:K15600]
HUW50_17720  [KO:K15599]
HUW50_17725  [KO:K15598]
HUW50_17930  [KO:K10117]
HUW50_17935  [KO:K10118]
HUW50_17940  [KO:K10119]
HUW50_18105  abc-f; ABC-F type ribosomal protection protein [KO:K18231]
HUW50_18590  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
HUW50_18595  modB; molybdate ABC transporter permease subunit [KO:K02018]
HUW50_18660  [KO:K18889]
HUW50_18665  [KO:K18890]
HUW50_20095  [KO:K07335]
HUW50_20100  [KO:K23537]
HUW50_20105  [KO:K23535]
HUW50_20110  [KO:K23536]
HUW50_20770  [KO:K17213]
HUW50_20775  [KO:K17215]
HUW50_20780  [KO:K17214]
HUW50_21120  [KO:K02000] [EC:7.6.2.9]
HUW50_21125  [KO:K02001]
HUW50_21130  [KO:K02002]
HUW50_21500  abc-f; ABC-F type ribosomal protection protein [KO:K18231]
HUW50_21705  [KO:K10824] [EC:7.2.2.11]
HUW50_21710  [KO:K15587] [EC:7.2.2.11]
HUW50_21715  [KO:K15586]
HUW50_21720  [KO:K15585]
HUW50_21725  nikA; nickel ABC transporter, nickel/metallophore periplasmic binding protein [KO:K15584]
HUW50_22135  [KO:K10119]
HUW50_22140  [KO:K10118]
HUW50_22145  [KO:K10117]
HUW50_22230  [KO:K10119]
HUW50_22235  [KO:K10118]
HUW50_22240  [KO:K10117]
HUW50_23090  [KO:K17318]
HUW50_23095  [KO:K17320]
HUW50_23100  [KO:K17319]
HUW50_23205  [KO:K17318]
HUW50_23210  [KO:K17320]
HUW50_23215  [KO:K17319]
HUW50_24085  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
HUW50_24090  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
HUW50_24095  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
HUW50_24100  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
HUW50_24105  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
HUW50_24155  [KO:K10119]
HUW50_24160  [KO:K10118]
HUW50_25230  [KO:K17320]
HUW50_25235  [KO:K17319]
HUW50_25240  [KO:K17318]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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