Metabacillus elymi: HUW50_11055
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Entry
HUW50_11055 CDS
T06752
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
meku
Metabacillus elymi
Pathway
meku03030
DNA replication
meku03410
Base excision repair
meku03420
Nucleotide excision repair
meku03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HUW50_11055 (ligA)
03410 Base excision repair
HUW50_11055 (ligA)
03420 Nucleotide excision repair
HUW50_11055 (ligA)
03430 Mismatch repair
HUW50_11055 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meku03032
]
HUW50_11055 (ligA)
03400 DNA repair and recombination proteins [BR:
meku03400
]
HUW50_11055 (ligA)
Enzymes [BR:
meku01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HUW50_11055 (ligA)
DNA replication proteins [BR:
meku03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HUW50_11055 (ligA)
DNA repair and recombination proteins [BR:
meku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HUW50_11055 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HUW50_11055 (ligA)
MMR (mismatch excision repair)
DNA ligase
HUW50_11055 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HUW50_11055 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
RNA_pol_A_CTD
HHH
RNA_ligase
BRCT_2
5_3_exonuc
MEIOC
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QNF27964
LinkDB
All DBs
Position
2321021..2323027
Genome browser
AA seq
668 aa
AA seq
DB search
MDKQSANKLARELHELINTYNYEYNVLDKPSVPDSEYDRLMQELLKLEEAFPELKTSDSP
TQRVGGTVLAAFQKVVHKTPMLSLGNAFNEADLRDFDRRVKQSVGDDVQYVVELKIDGLA
VSLRYENGLFVQGATRGDGTTGEDITENLKTIRSIPLRLKKELSFEVRGEAFMPKKSFEK
LNELRLQLEEEPFANPRNAAAGSIRQLDPKIAAKRNLDIFVYSIADLGGTGVEKHSEALD
LLEEVGFKTNQERRKCETIEEVLTIIEDLQEKRANLSYDIDGIVIKVDSLAQQEELGFTA
KSPRWAIAYKFPAEEVMTKLVDIELSVGRTGVITPTALLEPVRVAGTTVQRASLHNEDLI
REKDIKIGDTVVVKKAGDIIPEVVNVLIDLRTGEEQTFSMPTHCPACESELVRIEGEVAL
RCINPQCPAQIKEGLIHFVSRNAMNIDGLGERVVAQLFQEGLIKDVADLYRLTRDQLLEL
ERMGEKSTDNLLNAIVQSKENSLERLLFGLGIRHVGAKAAKTLAQEFETIEILQQATKDE
LIAINEIGDKMADAVVTYFDNPDVQYLVNELKSLGVNTTYKGPKLIRVEDSDSYLAGKTV
VLTGKLEQLSRNEAKEGIEALGGKVTGSVSKSTDLVVAGESAGSKLKKAQELNIEIWDEA
RLFDELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggataaacaatcagcaaataaactagctcgcgagctccatgagctaattaacacttat
aattatgaatacaatgttttagataaaccaagcgtgcctgattctgaatatgaccgcctt
atgcaggaactattaaagcttgaagaagcatttcctgaattgaaaacctcagattccccg
acacaaagagtcgggggtactgtgttagctgcttttcaaaaggttgttcacaaaacacca
atgctaagcttaggtaacgcttttaatgaggctgatttacgtgattttgaccgtcgagta
aaacagtctgtaggtgacgatgttcaatatgttgttgaattgaaaattgatggtttagcg
gtttctctaagatatgaaaatggactgtttgtacaaggtgctacgcgaggagacggtaca
acaggtgaggatattacggaaaacctcaaaacgatacgctccattccacttagattgaag
aaggaattgtcctttgaagtacgtggtgaggcatttatgccgaaaaagtcctttgagaag
ttgaatgaattacgattacaacttgaagaagagccattcgcaaacccacgtaatgctgca
gctggttccattagacagctagaccctaaaatagctgcaaagcgtaatttagatatcttt
gtatacagtattgcagatttaggtggaacaggtgttgaaaaacatagtgaagcactagat
ctactagaagaagtaggatttaaaacaaatcaagaacgaagaaaatgtgaaacgattgaa
gaagtcctcaccatcatagaagatcttcaagaaaaaagagcaaatttatcttacgatatt
gatggtatcgttattaaggtggattctctcgctcaacaggaagagcttgggtttactgct
aagagtccacgttgggccattgcttacaaatttccagcagaagaagttatgacaaagcta
gtggatattgaattaagtgtaggtcggactggtgtcattactccaacagctttattagag
ccagttcgggttgcggggacaactgttcaacgtgcctcacttcataatgaagatttaatt
agagaaaaggatattaaaattggtgatacggttgttgtcaaaaaagcaggtgatatcata
cctgaggttgtcaatgtgctaatagatctgcgcactggtgaagaacaaaccttttcgatg
cctacacattgccctgcttgtgaaagtgagctagttcgtattgaaggtgaggttgccctt
cgttgtattaatccacaatgtccggctcaaattaaagaaggtcttattcattttgtatca
aggaatgcaatgaacattgatggtcttggtgaaagagttgtagcacaattgtttcaagaa
ggattaattaaggatgttgcagatttatacagattaacgagagatcagcttctcgagctt
gagagaatgggagaaaaatctaccgataatttattaaatgcaattgtacaatcaaaagaa
aactcacttgaaagactattgtttggtttagggattcgccatgttggtgctaaagccgca
aaaacattagctcaagaatttgaaacaattgaaattcttcagcaagccacaaaggatgag
cttattgcgataaatgaaataggagacaaaatggctgatgcagttgtcacttattttgat
aacccagatgtgcagtatttagtaaatgagcttaaatctttaggtgtaaatacgacatac
aagggaccaaagctgattagggttgaagacagtgattcatacctagctggaaagactgtt
gtattaacagggaagcttgaacagctatcaagaaatgaagcaaaagaaggtattgaagca
cttggtggtaaagtaaccggtagcgtaagtaaaagtacagatcttgtggtagctggtgaa
tcagcaggaagcaagttaaagaaagcccaagaattaaatatagaaatatgggacgaagct
cggctctttgatgaactaaataaataa
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