KEGG   Metabacillus elymi: HUW50_11055
Entry
HUW50_11055       CDS       T06752                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
meku  Metabacillus elymi
Pathway
meku03030  DNA replication
meku03410  Base excision repair
meku03420  Nucleotide excision repair
meku03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:meku00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HUW50_11055 (ligA)
   03410 Base excision repair
    HUW50_11055 (ligA)
   03420 Nucleotide excision repair
    HUW50_11055 (ligA)
   03430 Mismatch repair
    HUW50_11055 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:meku03032]
    HUW50_11055 (ligA)
   03400 DNA repair and recombination proteins [BR:meku03400]
    HUW50_11055 (ligA)
Enzymes [BR:meku01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     HUW50_11055 (ligA)
DNA replication proteins [BR:meku03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HUW50_11055 (ligA)
DNA repair and recombination proteins [BR:meku03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     HUW50_11055 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HUW50_11055 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     HUW50_11055 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HUW50_11055 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT Nlig-Ia RNA_pol_A_CTD HHH RNA_ligase BRCT_2 5_3_exonuc MEIOC Zn_ribbon_NUD
Other DBs
NCBI-ProteinID: QNF27964
LinkDB
Position
2321021..2323027
AA seq 668 aa
MDKQSANKLARELHELINTYNYEYNVLDKPSVPDSEYDRLMQELLKLEEAFPELKTSDSP
TQRVGGTVLAAFQKVVHKTPMLSLGNAFNEADLRDFDRRVKQSVGDDVQYVVELKIDGLA
VSLRYENGLFVQGATRGDGTTGEDITENLKTIRSIPLRLKKELSFEVRGEAFMPKKSFEK
LNELRLQLEEEPFANPRNAAAGSIRQLDPKIAAKRNLDIFVYSIADLGGTGVEKHSEALD
LLEEVGFKTNQERRKCETIEEVLTIIEDLQEKRANLSYDIDGIVIKVDSLAQQEELGFTA
KSPRWAIAYKFPAEEVMTKLVDIELSVGRTGVITPTALLEPVRVAGTTVQRASLHNEDLI
REKDIKIGDTVVVKKAGDIIPEVVNVLIDLRTGEEQTFSMPTHCPACESELVRIEGEVAL
RCINPQCPAQIKEGLIHFVSRNAMNIDGLGERVVAQLFQEGLIKDVADLYRLTRDQLLEL
ERMGEKSTDNLLNAIVQSKENSLERLLFGLGIRHVGAKAAKTLAQEFETIEILQQATKDE
LIAINEIGDKMADAVVTYFDNPDVQYLVNELKSLGVNTTYKGPKLIRVEDSDSYLAGKTV
VLTGKLEQLSRNEAKEGIEALGGKVTGSVSKSTDLVVAGESAGSKLKKAQELNIEIWDEA
RLFDELNK
NT seq 2007 nt   +upstreamnt  +downstreamnt
atggataaacaatcagcaaataaactagctcgcgagctccatgagctaattaacacttat
aattatgaatacaatgttttagataaaccaagcgtgcctgattctgaatatgaccgcctt
atgcaggaactattaaagcttgaagaagcatttcctgaattgaaaacctcagattccccg
acacaaagagtcgggggtactgtgttagctgcttttcaaaaggttgttcacaaaacacca
atgctaagcttaggtaacgcttttaatgaggctgatttacgtgattttgaccgtcgagta
aaacagtctgtaggtgacgatgttcaatatgttgttgaattgaaaattgatggtttagcg
gtttctctaagatatgaaaatggactgtttgtacaaggtgctacgcgaggagacggtaca
acaggtgaggatattacggaaaacctcaaaacgatacgctccattccacttagattgaag
aaggaattgtcctttgaagtacgtggtgaggcatttatgccgaaaaagtcctttgagaag
ttgaatgaattacgattacaacttgaagaagagccattcgcaaacccacgtaatgctgca
gctggttccattagacagctagaccctaaaatagctgcaaagcgtaatttagatatcttt
gtatacagtattgcagatttaggtggaacaggtgttgaaaaacatagtgaagcactagat
ctactagaagaagtaggatttaaaacaaatcaagaacgaagaaaatgtgaaacgattgaa
gaagtcctcaccatcatagaagatcttcaagaaaaaagagcaaatttatcttacgatatt
gatggtatcgttattaaggtggattctctcgctcaacaggaagagcttgggtttactgct
aagagtccacgttgggccattgcttacaaatttccagcagaagaagttatgacaaagcta
gtggatattgaattaagtgtaggtcggactggtgtcattactccaacagctttattagag
ccagttcgggttgcggggacaactgttcaacgtgcctcacttcataatgaagatttaatt
agagaaaaggatattaaaattggtgatacggttgttgtcaaaaaagcaggtgatatcata
cctgaggttgtcaatgtgctaatagatctgcgcactggtgaagaacaaaccttttcgatg
cctacacattgccctgcttgtgaaagtgagctagttcgtattgaaggtgaggttgccctt
cgttgtattaatccacaatgtccggctcaaattaaagaaggtcttattcattttgtatca
aggaatgcaatgaacattgatggtcttggtgaaagagttgtagcacaattgtttcaagaa
ggattaattaaggatgttgcagatttatacagattaacgagagatcagcttctcgagctt
gagagaatgggagaaaaatctaccgataatttattaaatgcaattgtacaatcaaaagaa
aactcacttgaaagactattgtttggtttagggattcgccatgttggtgctaaagccgca
aaaacattagctcaagaatttgaaacaattgaaattcttcagcaagccacaaaggatgag
cttattgcgataaatgaaataggagacaaaatggctgatgcagttgtcacttattttgat
aacccagatgtgcagtatttagtaaatgagcttaaatctttaggtgtaaatacgacatac
aagggaccaaagctgattagggttgaagacagtgattcatacctagctggaaagactgtt
gtattaacagggaagcttgaacagctatcaagaaatgaagcaaaagaaggtattgaagca
cttggtggtaaagtaaccggtagcgtaagtaaaagtacagatcttgtggtagctggtgaa
tcagcaggaagcaagttaaagaaagcccaagaattaaatatagaaatatgggacgaagct
cggctctttgatgaactaaataaataa

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