Melaminivora suipulveris: C6568_00790
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Entry
C6568_00790 CDS
T05358
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mela
Melaminivora suipulveris
Pathway
mela03030
DNA replication
mela03410
Base excision repair
mela03420
Nucleotide excision repair
mela03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mela00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C6568_00790 (ligA)
03410 Base excision repair
C6568_00790 (ligA)
03420 Nucleotide excision repair
C6568_00790 (ligA)
03430 Mismatch repair
C6568_00790 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mela03032
]
C6568_00790 (ligA)
03400 DNA repair and recombination proteins [BR:
mela03400
]
C6568_00790 (ligA)
Enzymes [BR:
mela01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C6568_00790 (ligA)
DNA replication proteins [BR:
mela03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C6568_00790 (ligA)
DNA repair and recombination proteins [BR:
mela03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C6568_00790 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C6568_00790 (ligA)
MMR (mismatch excision repair)
DNA ligase
C6568_00790 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C6568_00790 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AVO50883
UniProt:
A0A2R3QGJ5
LinkDB
All DBs
Position
170527..172713
Genome browser
AA seq
728 aa
AA seq
DB search
MDPQSELFSASVGVSNTRVATKIEALRAQLNRWAHEYYVQDAPSVPDAEYDRAFQQLQAL
EGAYPELVTPDSPTQRVIGAVLPGLAAVRHRVPMLSIRTETDTEASGAETFDARVRRELK
LPAEAPPVEFVAEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNVRTIRQIPLVLP
PGAPPVLEVRGEVYMRRADFERLNERQRESAGKTFVNPRNAAAGAVRQLDSNITAQRPLS
FFAYGLGEVTPAAEGGPDFATHYQLLQQLKDWGFPVSALVEIAQGAPELVAYHQRVGRQR
DALPYDIDGVVYKVNNLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDIQVGRTGKL
TPVARLAPVFVGGVTVTNATLHNLFEIRKKGVRVGDQVIVRRAGDVIPEVVGVVPAALAP
VAQALSGSDALLDAAADQEGAAAGASRAAPRTPYVPNFRMPRQCPVCASAVVREKGEANH
RCTGGLFCPAQRKEAILHFAQRRAMDIEGLGEKLVDQLIEGHIIRTLPDLYRLGLAPLAQ
LDRMADKSAQNLLAALEKSKRTTLARFLFALGVRHVGEATAKELARHFGQLDALMDATPE
QLMQVPDVGPIVAQAVHGFFAEPHNREVVEQLRACGVHWVESEPQPAALLPLAGKTVVLT
GTLPTLTREQAQELLEAAGAKVAGSVSGKTSYVVAGEQAGSKLERAHKLGVPVLDEDGLR
ALLRGGEG
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggacccgcaatccgagcttttttcggcctcagtcggcgtcagcaatacgcgtgtagct
acaaaaattgaagcattgcgcgcgcagctgaaccgctgggcgcacgagtactacgtgcag
gatgcgcccagcgtccccgacgccgagtacgaccgggccttccagcagctgcaggcgctg
gagggcgcctaccccgagctggtcacgcccgactcgcccacgcagcgcgtcataggcgcg
gtgctgccgggcctggccgccgtgcgccaccgcgtgcccatgctcagcatccgcaccgag
accgacaccgaggccagcggcgccgagactttcgacgcgcgcgtgcgccgcgagctgaag
ctgcccgccgaagcgccgcccgtggaattcgtcgcggagccgaaattcgacggcctggcc
atgagcctgcgctacgagaacggccgcctggtgcaggccgccacgcgcggcgacggcgaa
gtgggcgaggacgtgacgcacaacgtgcgcaccatccgccagatcccgctggtgctgccc
cccggcgcgccgccggtgctggaggtgcgcggcgaggtctatatgcgccgcgccgacttc
gagcgcctgaacgagcgccagcgcgagagcgccggcaagaccttcgtgaacccgcgcaac
gccgccgccggtgccgtgcgccagctggattcgaacatcaccgcgcagcgcccgctgtcg
ttcttcgcctacggcctgggcgaggtcacgcccgcggccgagggtggcccggatttcgcc
acgcactaccaattgctgcagcagctgaaagattggggttttccggtctcagccctggtg
gaaattgcgcaaggcgctcctgaattggtagcgtaccaccagcgcgtgggccgccagcgc
gatgcgctgccctacgacatcgacggcgtggtctacaaggtcaacaacttggcgctgcag
cgccagctgggctttgtcacgcgggagccgcgctgggcggtggcgcacaagtacccggcg
caggagatggtcacgcgcgtggaaggcatagacatccaggtcgggcgcaccggcaagctg
acgccggtggcgcgcctggcgccggtgttcgtcggcggcgtcaccgtcaccaatgccacg
ctgcacaatctgttcgagatccgcaagaagggcgtgcgcgtgggcgatcaggtgatcgtg
cgccgggccggcgacgtgattcccgaagtggtcggcgtcgtgcccgcggcgctggcgccg
gtggcgcaggcgctgtccggctcggatgcgctgctggacgcggccgccgaccaggaaggc
gcagccgccggcgcttcgcgcgctgcgccgcgcacaccctatgtgcccaacttccgcatg
ccgcgccagtgcccggtctgcgccagcgcggtggtgcgcgagaaaggcgaggccaaccat
cgctgcacgggcggcctgttttgcccggcgcagcgcaaggaggccatcctgcatttcgcc
cagcgccgcgccatggacatcgagggcctgggcgaaaagctggtggaccagctgatcgaa
ggccacatcatccgcaccttgcccgacctgtaccggctgggcctggcgcctctcgcgcag
ctcgaccgcatggccgacaagtccgcgcagaacctgctggcggcgctggaaaaatccaaa
cgcacgacgctggcgcgcttcctgttcgcgctgggcgtccgccacgtcggcgaggccacg
gccaaggagctggcgcggcatttcggccaactcgacgcgctgatggacgccacgcccgag
cagctgatgcaggtgcccgacgtcggccccatcgtcgcccaggcggtgcacggcttcttc
gccgaaccgcacaaccgcgaggtggtcgagcagctgcgcgcctgcggcgtgcactgggtc
gagagcgagccgcagccagcggcgctgctgcccctggccggcaagaccgtggtgctgacc
ggcaccctgcccacgctcacgcgcgagcaggcgcaggagctgctggaggccgcgggcgcc
aaggtcgcgggctcggtcagcggcaagaccagctatgtggtggccggcgagcaggccggc
tccaagctggagcgcgcgcacaagctgggtgtgccggtgctcgacgaggacggcctgcgc
gcactgctgcggggcggcgagggatag
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