Candidatus Megaera endosymbiont of Mesostigma viride: LF888_03275
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Entry
LF888_03275 CDS
T07589
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
menm
Candidatus Megaera endosymbiont of Mesostigma viride
Pathway
menm03030
DNA replication
menm03410
Base excision repair
menm03420
Nucleotide excision repair
menm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
menm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LF888_03275 (ligA)
03410 Base excision repair
LF888_03275 (ligA)
03420 Nucleotide excision repair
LF888_03275 (ligA)
03430 Mismatch repair
LF888_03275 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
menm03032
]
LF888_03275 (ligA)
03400 DNA repair and recombination proteins [BR:
menm03400
]
LF888_03275 (ligA)
Enzymes [BR:
menm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LF888_03275 (ligA)
DNA replication proteins [BR:
menm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LF888_03275 (ligA)
DNA repair and recombination proteins [BR:
menm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LF888_03275 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LF888_03275 (ligA)
MMR (mismatch excision repair)
DNA ligase
LF888_03275 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LF888_03275 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
TcdB_N
Motif
Other DBs
NCBI-ProteinID:
UCM93534
LinkDB
All DBs
Position
complement(772844..774913)
Genome browser
AA seq
689 aa
AA seq
DB search
MDIQRITQEQARELIKKLSQEIKEYNIAYYQENAPKISDAEYDQLFFTLKNLEEEFPEYL
TDDSPTQNVGSHILDKFEKHEHKIPMLSLANGFEIDDIADFIDRTKRFLLTDDFPEIFCE
PKIDGVSFSATYINGKLTTGATRGDGYIGEDITANIKTIKNFPHKITNAPEFLEIRGEIF
IEKEDFIKLNLQQELQGKQIFANPRNSASGSLRQLDSNITLSRPLKYFTYGIGYSNMKFA
DTQEKLLLVLANFGFQTNKIGKLVNSLEELNTFYENLLVTRSMLAYEIDGVVYKVNNFEL
QERLGFIARSPRFAIAHKFPAIIAETKLFGITVQVGRTGVLTPVAELEPIKIGGVTVARA
TLHNFAEIKRLDIRIGDMVLLHRAGDVIPKVNKVNLSKRTGSEKIVSLPTNCPSCNSLLH
ILPDEVIIRCDNGLNCPTQLVRSIIHFASKDALDIDGLGAKQIEFLQAVGLINNPVDIFF
LEDKNSQSLTKLENMNGWGKRSVENLFNSIKEAKRTTLARFIYSLGIRQIGQSNAKILAK
EFRNIKNFINSMLLLAEGDEEKYYQLRSLEGFADKTVTDIRNFFSCKQNVDTINQLVNIL
TIEDYENNTISSSITGLNVIFTGTLNSISRNEAKARAEKLGAKIVSSVSANTNLVIAGEK
AGSKLKKAEEFGIKIISEKEWLEIIKEVI
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggatatccagaggattacccaagaacaagctagagaacttattaagaaactctcacaa
gaaataaaagagtataacattgcttactaccaagaaaatgctcctaagatttcagatgca
gaatatgaccagctgttttttactcttaaaaatttagaagaagaatttcctgagtattta
acagatgatagcccaactcaaaatgttggcagccacattttggataaatttgaaaagcac
gaacataaaatcccaatgctatctttagctaatggttttgagattgatgatattgctgat
tttattgaccgaaccaaaagattcttacttacagatgattttcctgaaatattttgcgaa
cccaaaattgatggggtttctttttctgcgacctatataaacggtaaacttacgactggt
gctaccagaggtgatggatatattggagaggatattaccgctaatattaaaactattaaa
aattttccccataaaattactaatgctcccgaatttttagaaatcagaggagaaatattt
atcgagaaagaagattttataaagcttaatctacagcaggaattgcaagggaagcagatt
tttgctaatccaagaaattcagcttcaggttctctgcgccagttagattccaacataaca
ctctcaaggccgctgaaatattttacttatggtattggctattcaaacatgaaatttgcc
gatacccaagaaaaactactattagtcttggctaattttggattccaaacaaataaaatt
ggcaaattggtaaattcacttgaggaattaaacactttttatgaaaaccttctagtaaca
agaagtatgcttgcttatgaaatcgacggggtagtgtataaggttaataattttgaatta
caagagcgattagggtttattgcccgcagccccagatttgctatagctcataaatttccg
gctataattgctgaaacaaaattattcggtattactgtccaggtaggtagaacaggggtt
ctaacgccagttgcagaattagagcctataaaaattggcggagttactgtagctcgggcc
actttgcataattttgctgaaataaaacggttagatataagaatcggtgatatggtttta
ttgcatagagctggtgatgttatccctaaagtaaataaagtaaatttatcaaaacgtacc
ggctcggaaaaaatagtttccttgccaactaattgtccttcctgtaattctcttctccat
attttaccagacgaggtgataattcgctgtgataatgggcttaattgtcccacgcagtta
gtacggtcaattattcattttgcaagtaaagatgctctcgatattgatggactcggggca
aaacagattgaatttctccaagctgtggggctcattaataatccagttgatatatttttt
cttgaagataaaaacagtcaaagtcttacaaaactcgaaaatatgaatggttggggaaag
agatcagtagagaacctgtttaatagtattaaagaggctaagcgtacgactctagccaga
tttatctattctttaggtataaggcagattggtcaatctaatgctaaaatactggcaaaa
gaatttagaaatataaaaaattttatcaattctatgttgctgcttgcagaaggagatgag
gagaaatactatcagttaagaagtttagaaggttttgctgataaaacagttacggatata
agaaactttttctcttgtaagcagaacgttgatactattaatcagctggttaatatcctt
accattgaggattatgaaaataacacaatctcttcttcgattacggggttgaatgttatt
tttaccggtactttaaattctatttccaggaacgaagctaaagcaagagcggaaaaatta
ggagcaaaaattgtcagtagtgtttctgctaataccaatttagttattgccggggaaaaa
gcaggaagcaaattaaaaaaagccgaagagtttggtattaaaattatttccgagaaggaa
tggttagagataattaaggaggtaatatga
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