Massilia endophytica: LSQ66_10620
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Entry
LSQ66_10620 CDS
T09693
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
meny
Massilia endophytica
Pathway
meny03030
DNA replication
meny03410
Base excision repair
meny03420
Nucleotide excision repair
meny03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LSQ66_10620 (ligA)
03410 Base excision repair
LSQ66_10620 (ligA)
03420 Nucleotide excision repair
LSQ66_10620 (ligA)
03430 Mismatch repair
LSQ66_10620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meny03032
]
LSQ66_10620 (ligA)
03400 DNA repair and recombination proteins [BR:
meny03400
]
LSQ66_10620 (ligA)
Enzymes [BR:
meny01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LSQ66_10620 (ligA)
DNA replication proteins [BR:
meny03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LSQ66_10620 (ligA)
DNA repair and recombination proteins [BR:
meny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LSQ66_10620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LSQ66_10620 (ligA)
MMR (mismatch excision repair)
DNA ligase
LSQ66_10620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LSQ66_10620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
DZR_2
DUF7340
DUF6688_C
Motif
Other DBs
NCBI-ProteinID:
UGQ48888
LinkDB
All DBs
Position
complement(2384713..2387052)
Genome browser
AA seq
779 aa
AA seq
DB search
MKEKSPAERVAWLTAELNRHLHAYHVLDAPTIPDAEYDKLFLELQQLEAAHPELAAPDSP
TLRVGAPPLAQFDAVTHAVPMLSLNNGFSDEDIENFDRRVREGLDIVEVEYAAEVKFDGL
AINLRYENGLFVQAATRGDGYTGEDVSANIRTIKGIPLRLHGDKLPSVLDVRGEVLMFKA
DFAAMNARQRELGQKEFVNPRNAAAGALRQLDSRITASRKLRFFAYGIGELVGADMPSTH
AALLDWYEKLGLPVAKERAVVRGKDGLLAYYAKIGAGRPAMPYEIDGVVYKTNRVEDQRA
LGFVSRAPRFALAHKFPAEEATTVVQAIDVQVGRTGAITPVARLEPVFVGGVTVTNATLH
NEDEVRRKDVRIGDTVIVRRAGDVIPEVLSVVLDKRPSPEPAQYVLPKTCPVCGSHVVRE
EDEAVARCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGDRYIDNLVECNLVNGVADLYGLT
QADLLKMKRLADEREGTTPETVQQGKIATKWADNLLDAIAASKKPPLERLLFALGIRHVG
ESTAKTLADWLGKFELIRRAPEALLRVLPDIGGTVAESIADFFAEEKNQQAIDALLAAGV
APQGEHAPKAALREKLEPVKLLAALDIPKLTEPRARQLIEQGVTLEALAWLKVFDVFGLP
AAVAASLEQWMAVPENRERLVALDALRTELLAQLPEVAESEGAMSGKTFVLTGTLPTMSR
DAAQALIEQAGGKVSGSVSKKTSYVVAGAEAGSKLAKAEELGITILDEAGLLALLGQTG
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaaatcaccggcggagcgcgttgcctggctcacggcggagctgaaccgtcac
ctgcacgcctatcacgtgctcgacgcgcccaccattccggacgccgagtacgacaagcta
ttcctcgaactccagcagctggaggcggcccatcccgagctggccgcgccggactcgccg
accctgcgtgtcggcgcgccgccgctggcgcagttcgacgccgtcacgcacgccgtgccc
atgctgtccctgaacaacggcttcagcgacgaggacatcgagaacttcgaccgccgcgtg
cgcgaagggctcgatatcgtggaggtggagtacgcggccgaagtgaagttcgacggcctg
gccatcaacctgcgctatgagaacggcctgttcgtgcaggccgccacgcgcggcgacggc
tatacgggcgaggacgtgagcgccaatatccgcaccatcaagggcattccgctgcgcctg
catggcgacaagctgccgtccgtgctggacgtgcgcggcgaggtgctgatgttcaaggcc
gatttcgcggccatgaatgcgcgccagcgcgagctgggacagaaggaattcgtcaatccg
cgcaatgccgcggcaggcgcgctgcgccagctcgactcgcgcattacggcttcgcgcaag
ctgcgcttcttcgcctacggcatcggcgagctggttggggcggacatgccgtccacccac
gccgcgctgctcgactggtacgagaagctcggcctgcccgtggcgaaggagcgcgccgtg
gtgcgcggcaaggacggcctgctggcctattacgcgaagatcggcgcgggccgccccgcc
atgccgtacgagatcgacggcgtggtgtacaagacgaaccgcgtggaagaccagcgggcg
ctgggcttcgtttcgcgcgcgccgcgcttcgccctggcgcacaagttcccggcggaagag
gcgaccaccgtcgtgcaggccatcgatgtgcaggtgggccgcaccggcgccatcacgccc
gtcgcgcgcctggagccggtgttcgtcggcggcgtcaccgtcaccaacgccaccctgcac
aatgaggacgaggtgcgccgcaaggacgtgcgcatcggagacaccgtcatcgtgcgccgc
gcgggcgatgtgattcccgaggtgctgtcggtggtgctggacaagcgtcccagccccgag
ccagcgcaatatgtgctgccgaagacctgtccggtctgcggctcccacgtggtgcgcgag
gaggacgaggccgtggcgcgctgctccggcggcctgttctgctccgcccagcgcaaggag
gcgatccgccatttcgcgggccgccgcatgatggatatcgaaggcctgggcgaccgctat
atcgacaacctggtcgaatgcaatctggtcaacggcgtggcggacctgtacggcctcacg
caggccgacctgctgaagatgaagcgcctggcggacgaacgcgagggcaccacgcccgag
acggtccagcagggcaagatcgccaccaagtgggcggacaatctgctcgacgccatcgcc
gccagcaagaagccgccgctggaacgcctgctgttcgcgctgggcattcgccacgtgggc
gaatcgaccgcgaagacgctggccgactggctcggcaagttcgagctgatccgccgcgcg
ccggaagcgctgctgcgcgtgctgcccgatatcggcggcaccgtggccgaatcgattgcg
gacttctttgccgaggagaagaaccaacaggccatcgatgcgctgctggccgcgggtgtg
gcgccgcaaggcgaacatgcgcccaaggcggcgttgcgcgagaagctggagcccgtgaag
ctgctggccgcgctggatatcccgaaactgacggagccgcgcgcccgccaactgatcgag
cagggcgtcacgctggaagcgctggcctggctcaaggtcttcgatgtattcggcctgccc
gccgcggtggcggcatcgctggagcaatggatggccgtgccggagaaccgcgagcgcctt
gtggcgctggacgcgctgcgcaccgagctgctggcccagctgcccgaagtggcggaatcg
gaaggggcaatgagcggcaagacgttcgtcctgaccggcaccctgccgaccatgagccgc
gacgcggcccaggcattgatcgagcaggcgggcggcaaggtttccggctcggtgtcgaag
aaaacatcgtacgtggtggcgggcgccgaagcaggcagcaagctcgccaaggccgaggaa
ctcggcatcaccatcctggacgaggcaggcctgcttgccttgctggggcagacgggatga
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